RNA id: XM_036970031.1


Basic Information

Item Value
RNA id XM_036970031.1
length 2707
RNA type mRNA
GC content 0.43
exon number 5
gene id LOC118946024
representative True

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 25703755 ~ 25709204 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATTACATCTATACATTTTTCTCTCCTTTTGTGGCATGTAACGCAGCtgaatagaacacacacactcctcaccccAGACAGGATTTGCGTGTTACAATTCATCTGAAGTTGAGATTATCCTCCCACTACCCCTAGTACCCCCTAAAGACAGTATGTTGTAGTCCTGAACCCGTGCCCCAGACATCGTGGACATCAAGCCAGTGAACATGGAGGATCTGACAGAGGTGATAACAGCAGCAGAGTTCCACCCTCACCACTGTAACCTGTTGGTCTATAGCAGCAGTAAGGGAACTCTACGGCTCTGTGACATGAGAGAGGCCGCACTGTGTGACAAACACTCCAAACTGTTTGAGGAGCCGGAAGACCCCAGTAACCGCTCCTTCTTCTCTGAGATCATCTCGTCTGTGTCGGACGTGAAGTTCAGCCACAGTGGGCGCTACCTGCTGACCAGAGACTACCTCACTGCCAAGGTGTGGGACCTCAACATGGAGAACAAGCCCCTGGAGATATACCAGGTGCATGAATACCTCCGCAGCAAGCTTTGCTCCCTGTACGAGAACGACTGCATCTTCGACAAGTTTGAGTGTGTCTGGAACGGCTCAGACAGTGTGATCATGACTGGGGCCTACAACAACTTCTTCCGGATGTTTGACCGGAACACCAAACGCGACGTGACCCTGGAGGCGTCCAGGGAGAGCAGTAAGCCCCGGGCCGTGCTCAAGCCTCGCCGCGTCTGCCAGGGCGGGAAACGACGCAAGGATGACATCAGCGTAGACAGCCTGGACTTCACCAAGAAGATCCTGCACACGGCCTGGCACCCCACGGAGAACATCATCGCCATCGCTGCCACCAACAACCTGTACATCTTCCAGGACAAACTCAACCAGGAGATgcatggctgagagagagagagagcaggatgctggagacatacacacacacacacacacactgatgcacaCATTCATTCAGACAGTAAGGCAAGCAAGAACATataacatatgcacacacacacacactctctctctctctctctagatgacAGGGAGACGCTGTAAAGACACACTCCACAGTTCTCAGTGGATGGACCGGTCCACCCtaggtaccagacagggggagctGGATAACCCAATAAGAATGATGCTGGATTATGGTTTATGGAATTCTAAATCATGGATGTGTTGACTGTTGACCTCTGGATTGTGGctgatctgatggtgtttgttTTGCTATTGGTCATTTTTGCATTCTGAGGGGTTTGACCTCTTGACAGGAGGAGCTTTCACATGTGTCTGCCTTTTTCTGATCatctgcctcttcctctccttcctcttcctcctcactctGTTTCTGTACATGTctgtgctcagtcctctcctacAGTCTGGACTGATTCTTGACGTTAGTGTAAAAACCCTTTGTGGTTCCtggtggtaactagtggaaatgTTTGCGGAATGTTTGAAGTCTAATTctagtttttttttgttaaatcatgttacatgttacatgaTTTGAATGATCATTAATGATGATGGTAAAAGTGATGACAATGACAGTTAATGGTACACGAGACATTAGTCAGTAGGACATTGGGTTCCACAAGGCTGCCTGTCACCCCTAGGTGACATTTAATCCTGATGTTTCAGTTGACTGTGAAGACTGCTGGGGAACTTGGCTGTGTCGTGCTACTTTGCAATGAAACACAAGGAATGAAGCAAAAATCAAGTCCAGCAATCAAGCAAAAAAATATGCTGCAtgatggattttttttttgtttatataCATTTACTGGCTGCCTTTCTAACCATAAACAGGCTGTAAAAAGGCTTCTGGAGCTCTGCCTCTACACAGCACTAGTTACCATAGACAACAACAAAGAGCTCTCCTTTTGTTTGTGTTTACCGGACACAAAAAGCATGTTTACCAGTGTTCACTTTTACGGTGTACATTTGAAATGAAGCCCAAATAATACATAGTTTTACATGAAGATACTGAACCAGAGGTATGGGGAATGTTTTATCAACGTTGTAATCTAAACCTTTAAAGGAACGTTTTATCAGGGTTGTAATCTAAACCTTTAAAGGAACGTTTTATCAGGGTTGTAATCTAAACATTTAAAGGAATGTTTTATCAACGTTGTAATCTAAACCTTTAAAGGAATGTTTTATCAACGTTGTAATCTAAACCTTTAAAGGAACGTTTTATCAGGGTTGTAATCTAAACATTTAAAGGAATGTTTTATCAACGTTGTAATCTAAACCTTTAAAGGAATGTTTTATCAGGGTTGTAATCTAAACCTTTAAAGGAATGTTTTATCAGGGTTGTAATCTAAACCTTTAAAGGGCCTGAATGGTATCTGCTGTAAATTCAACTATTTTTGACATTTCTAGGTTTGTTGTTTCGGATAAAGAACCAAGAGTGCAGAGCCGATCATCTCTGATGATGGTGTTCATGGCAACAAGAGAGAGATGATTAAACTCTTCCCTCTTAGCCTTTCAACAAATTCAGAATTTTTTTGAGAAGTTATTGTTAACTTGTGTATTTTTTTAACATCTGTCACTTGTGTTTGATTTCATGTCCTGCTGCCCTGGCATTGATTCACATATTTTGTGTTCATGTATTTTCAACGGGAAAAAAATCTCATGAACAATTACGAATATgttaatgttattttttttctgaATAAAGATTTCAACAATATTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2591462 lncRNA upstream 117027 25581993 ~ 25586728 (+) False si:dkey-74k8.4
TU2591463 lncRNA upstream 119871 25557578 ~ 25583884 (+) False si:dkey-74k8.4
TU2591466 lncRNA upstream 121273 25557578 ~ 25582482 (+) False si:dkey-74k8.4
TU2591477 lncRNA upstream 121773 25581542 ~ 25581982 (+) False si:dkey-74k8.4
TU2591293 lncRNA upstream 282436 25420334 ~ 25421319 (+) True G2265454
TU2591579 lncRNA downstream 107705 25816909 ~ 25819292 (+) True LOC110504413
TU2591607 lncRNA downstream 115167 25824371 ~ 25824729 (+) True G2265698
TU2591609 lncRNA downstream 126717 25835921 ~ 25836374 (+) True G2265700
TU2591652 lncRNA downstream 242448 25951652 ~ 25951961 (+) True G2265731
TU2591668 lncRNA downstream 268681 25977885 ~ 25978096 (+) True G2265743
XM_036970028.1 mRNA upstream 8 25680193 ~ 25703747 (+) False LOC110504850
XM_036970030.1 mRNA upstream 8 25680193 ~ 25703747 (+) True LOC110504850
XM_021583704.2 mRNA upstream 33000 25665730 ~ 25670755 (+) False LOC110504848
XM_021583705.2 mRNA upstream 33000 25665730 ~ 25670755 (+) False LOC110504848
XM_036970216.1 mRNA upstream 33000 25665730 ~ 25670755 (+) True LOC110504848
XM_036970073.1 mRNA downstream 32259 25741463 ~ 25744514 (+) True LOC118946029
XM_036969804.1 mRNA downstream 47685 25756889 ~ 25820010 (+) False LOC110504413
XM_036969803.1 mRNA downstream 111231 25820435 ~ 25838497 (+) False LOC110504852
XM_036969802.1 mRNA downstream 111284 25820488 ~ 25838497 (+) False LOC110504852
XM_021583711.2 mRNA downstream 171419 25880623 ~ 25930604 (+) False LOC110504854
TU2591497 other upstream 76899 25625145 ~ 25626856 (+) False G2265625
TU2591501 other upstream 76899 25625145 ~ 25626856 (+) True G2265625
TU2591464 other upstream 117688 25581993 ~ 25586067 (+) True si:dkey-74k8.4
TU2591263 other upstream 459426 25215651 ~ 25244329 (+) True G2265425
TU2589999 other upstream 1512720 24190750 ~ 24191035 (+) True G2264345
TU2591580 other downstream 114836 25824040 ~ 25825540 (+) True LOC110504852
TU2591669 other downstream 268931 25978135 ~ 25978638 (+) True G2265744
TU2592624 other downstream 580521 26289725 ~ 26292004 (+) False LOC118946064
TU2592627 other downstream 580521 26289725 ~ 26291661 (+) False LOC118946064
TU2592632 other downstream 580521 26289725 ~ 26291556 (+) False LOC118946064

Expression Profile