RNA id: XM_036969803.1


Basic Information

Item Value
RNA id XM_036969803.1
length 7423
RNA type mRNA
GC content 0.53
exon number 19
gene id LOC110504852
representative False

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 25820435 ~ 25838497 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aagagaggacaAAGAAgcgaagggagagaaagagggaggtcagagagGTTCTAGAGAAGAGGTCACCCATGAACAACAACCATGGAGGGGAACATGATTACAACAGCGGGGACCGGAACCGGAGCTCACTCTGTAACCATGGTAACAGGTCCCACTGGCACCCCGGACCTCCAGGTTCTGACTGACAGAGTGAAGCTTCTAGAGCACAGCCTGAGAGACAACGTCAGCTCCTTCACTGAGTCTGAGAGCGCTCTGCACAGCAGGATTAGAGAGTTGGAGGTGTCAGAAAAGAGCCTGCTACAGAAGGTGGAGGACCTTACTTCCAACTCAGTCCTCCACTGCCCCAGCATGCTGCAGCGCCAGAGGCTGGATGAGCGGCTCCACGCGCTGAGGGAGGAGGTACGCTCCATGtcccaGGAGAAGGAGCGTGGGGATCGTGTGTGGAGGGAGAGGCTGAGGCGCTGCCAGGCCCAGCTCAGGGCTAAAGAAGAGGAGATGGGCCGCCAGTCTCAGTACTTTGAGCACTTTAAGAGCCAGCTGCACCACAAGCTAGGCCtggccagagacagagagcagggccTGCAGACCAGACTCTACCAGCTGGAGCGACCAGTGCTGGAGATGAACGTATCTGCTGCCACCTACATAGCCCCTGTCAACACAGCTAGCACCAACTCCGTTACTGCAGACAATGTCAAGTCCATCATGGTACCAACCTCAGGCcaacagagaacagagacagagagactgcccCACCcaagggaggaaggagaaggagaggaggaggacggtGAGGCGAAGACACAGCGGAGACACTACGGACAACAGCTCCAGCAGAAGCAGGGAGTGGATggtagagaaatagagggagaaagagagggggaggaaggggatgaTGGTGAGACTCTGGGGGGTGAGGCTAGACTGAGAAGCTTCATCCTCAGCCTCCAGGAGGACCTCAGGGTTCTGCTGGAGAGGGAGGAGCAGGGGCTGGCGGAGCAGAGGGGGCTGATGGAACAGTTGGAGGAAGCGCAGGAGAACAACCACTTCTTGTCCTGTACGTTGGAGGAGATGAAGACGGTGGTCCACAGACTGAAGCTGACAGAGAGCTCCCtgatggaggaggtggaggagctgcAAGAGGAGAACCAGAGACTGTGTCAGAGGGTCAGCCACACTCTGAGACAGACCAACCACAGCCTGGGTTCTACTGACCCCAGCCCTGTCTCTACCCCCAGCCTGGCTACCTCCCTGTCAAACACCCCTGGCCTGGGTCAACCAGTTCCCTGCTCTGTGAACAACACTGACCCGGTGAAGATGATCCCAGGCCAGTCTTCACTAGACACATACCCCTCTGCTCAACACCATGGAGCAACAGAGAGGTCGCAGGAAAACTCCACTCTGCCTCTGCCCCAGCCGGACCTCCTGAACCTCTCAGGCCACCGTAGCCAGAACCCCGGCCTCATATCCCTGGGTACTAAGAGCGTTGAGGGTCTGGGGGAGTTGTCCCTGAGGGACTGGTGTCCTGGTCCTGGGGGCTTCCCCTCTCTCAACCTGGAGGAGGGGACAAGCGAGGAGACTGAGGCCCTGAAAGAGGCTTACAGGAGCATGGGGGGCGACATGGACTCACTCCGGGACCACAGGGACCAGCTGGAGAGCACTCTACgacacacacaggaccagctGCACAGGGTGACCGAGGAGAACGCCCGACTGAAATGTAAACTCAGGGCGCAGGGAGAAACAGGGGCCTGCGAGGTGGAGCTTGTTGGCGAGAGCATGACAAATGTCCAGGAAAACAAGGTGTCAACTCCAAACCTCATACCCCAGAGTTGCAGAGACCTCACTGCAACTCCATATCAGAATGATACTATCCTAGCCTTAGCCCAGGATGACCTGTCCCTGTATGCCTTAGCCCAAGATGACCTAGCCCTAGCCTTGAACCAGGAGAACCGGGCCCTGGGCAGGCGTATCCAGGAGCTCCTAGCCCACATAGAGAGccaggagggggagagtgagagggagctAGTCCAGCTCAGGCTGCAAGTGTCCCTGCTAGAGAGGGAGAGCACCAGTCTGGAGCAGGAGAACCTGGAGCAGGGAGGTCTCATCACTGAACTGACCAGGAAGACTGAGGATGACCTCAACACTATCATAGAGCTGCAGGAAAGACGGGTCGAGAAGGGTCAGCTAGGCCTACAGCAGGGTGACAGTGGTTTGACCACTGAGTCAGAGTCAGTGCACGCTCAACAGGGTCAACCCACAGTAGGGGTTGTGACCAGTTTACAAGGTGATCAGACGCCAGGGTCAGTGAATAGTGGTGTACCACAGGTTGACCACACGGTTGAGTCAGTGTGTGGTCAGCAGGAGGACCGTTTGACCACGGAGTCAACGTGCAGGCTTAGAGAGAAGAGGGACGAGCTGATTGGCTATCTCAGTGATCTCAAAGAGGAAAGAGAACAGGTAGCCCTCTCACTTAGCAGTCAGACAGAGGAGAAACACCAGCTAACACGCTCCATGTGGGTTCTGAAAGAAGAACGTGACCAGATCCATAAGTCACTCTGCGGTTtaaaagaagagaaagaacagcTGACAAGGTCCCTCTGTGGTCTGAAAGATGAGAGAGACAAGGTGACGCGGTCAATGTGTGGTttaaaagaggagagagaccagctagTTCAGTCAATGTTTGGACtcgaggaggagagagaccagctagTTCAGTCAATGTCTGGACtcgaggaggagagagaccagctagTTCAGTCAATGTCTGGACtccaggaggagagagaccagccAGTTCAGTCAATGTCTGGACtccaggaggagagagaccagctagTTCAGTCAATGTCTGGACtccaggaggagagagaccagccAGTTCAGTCAATGTCTGGACtccaggaggagagagaccagctagTTCAGTCAATGTCTGGACtccaggaggagagagaccagctagTTCAGTCAATGTCTGgactacaggaggagagagaccagctagTTAAGTCAATGTCTGgactccaggaggacagagaccAGCTAGTTCAGTCAATGTCTGGACTCCAGGAGGTGAGAGACCAGCTAGTTCAGTCAATGTCTGGACTCCAGGAGGAGAAAGACCAGCTAGTTCAGTCAATGTCTGgactacaggaggagagagaccagctagTTAAGTCAATGTCTGGACtccaggaggagagagaccagctagTTCAGTCAATGTCTGGACTCCAGGAGGTGAGAGACCAGCTAGTTCAGTCAATGTCTGGActccaggaggagagagacaagctCTCGCAGTCTCTCTTCGGccaaaaagatgagagagaccagtTGATGCAGTCAATGTGTGGTTTAAAGGGACAGAGAGACCAGCTAACACAGACACTCAGCCGTCTAGAGCAGGAAAGAGACAAGCTGTCATCTCTCAGCCTTCAAACACGAGAGCGGTACCAGGTGGACCAGTTTGTCTCTGATCTAAAAGAAGAGAAAGAGCAGCTAGTTCAGTCAATGGATGTTCagagagaacagctcacagaggagagagaccaatTGCAGATGGACGTCGCTACTCTACGGAATCAGCTGCTGTTACAGGGGCGGAGCCACAGCCAGCAGCCCTCAGAGAACCACGTTGGCAAGGCAACACGGACAGAGGTTGTggctacagagagagggggtcagaTGCCAAAAATGCATGATGATGGTAATGTCACTCATAGATGTCTGGCCACAGTCTACTCCTACAAGACCATCCGTCTGGCACAGTCTGCACAGGACCActtgggagagaaagaggaaacagATATGGAGCAGAGTGAACTGATGAGGGAGATCGAGTCGCTGGGGTTAGAACTCAGAAACTCACGGGAGGTACTGAAGAAGACCCAATCAGAGGCTCAAAGGTGGTACCGTGAGCTGGGTGTGTCTGAGGTCAGACGAGAGGAGGCTGAGAAGAGGGCGGGAAAGGCAGCCAATGAGGTGAAGGGGATGAGAGAGGAAACCAAGGAGGTGGAGAAAACAAAGACGGAAAACCACACACTGAGAGCAGAGTTGGGAGAGGTGAAGGGCAGACTATTgtgtctggagagagagaagaccgaTGCTCACACACTGAGGATCAAGATCCAAGAGAAGTTCAGCTTGCTTCAGGCTGAACTCAAAGCCAAGAGTGTTGCTCTGAAGGAGCTGAGTTCAGAGTACACATCCCTGAAGGGAGAGCAGGGCAGCAGAGAGGACTGGAGCAACACACTCACCTTACTGAGGGTGCGCTATGATGACATCAGAAATAAGTACAATGTCCTCCTGAGAAAGAGTCAGACGGATCTGGACATAGCTCCTCTAAAGGCCAAGCTGTCATGTCTGGTGGTGAAGTGCCAGCAGAGGAACAGTCTACTGGTGCAGTTGATGCAAGCCCTGCGTCGGTATGGCTGCCTGGACTACAATCTGACCCAGGAGGCTGAGGACCTGCTTAATGACACAGCACTGCAGGACTACGCCAGCACCTTCACACCCCCACCCACTGCAGCTCTGCAGCAGAACACCCACCTTCTCCCACCTGCAGCCTCAGAACGACCGGAGTGCTCACAGACCTCTGCTGCAGCCTCCGCAGCACAGGAGCTGAGTAAAGCTGTGTCTGAAGGCAGTAGGAGGGAACACTTCAGAGTGTGTGTGGCCACAGCAGACTACTGCCCCTCTCCGAACATGCCTCACACTCTACTGCCAATGCTGCCCCTTTCTGCGGGTGAATCAGTCCAAGTTACTGGACTTCCAGACAGACATGGGATGTACCATGCCGAGGTGAAAGGGGAATCTGGCCTGGTCCCTGCCCGTTTCTTAGAGGAGAATGGGAGACCACTCATCCTGACTTCCCCCTCGCCAGAGAGATGTGCCAGTCTGACTAGGAAGCTGACCAGTCCAGGGAAGATCATCAACCTTCACCAGCAGTTGCAGAACACTCTCTCCAACAGCTACCAGGTTTTCCCTTCCAAGACCAGCCCCCAGGTTTACTCCAGTCCCCCTCCAGGACAGGGGTACTCCCCAGGATACCCCAACCACAACCCTGCTGCCCCCAACCGACCCAAGCATACCCTTGTAGCAACTACCCCTATTATTACTAGTACTAGTCTCTCTGCCACTGCCCCCACTAAAACTACCAGTGATGGTGCTACCTCTTCTAAGCAGACCCCAAACAGAGCACATCCAACTACCAGCCCTCCtgtctacaccaccaccaccactactgcccTTAGCAGTGGTAAAGAACCCCTCTCTAAAACTGGCTCTGCTGCTGCTACCTCCAATGTTACAACCCCTGTTAATACCCCTCCTACCGCTGTGGCCCGGACTGTTAAAGCACAAACTACCACTGCCTTGTGGAACACTGCCCCCACCAAATCTGCCCCTCCACCTATTACCGCTGGAACTACAGCCCCCACCAAATCTGCCCCTCCACCTATTACCGCTGGAACTACAGCCCCCACCAAAATGGCCCCCATCACTACTGCTCTTCCCCTTGCTGAGTTGTCACGACTGCCTGATGAGGATCATTGCATCAAGAAGCCCCTCTCCAACCTCCAGCCTGAACAAGCTAAACCACCCAAACTCAGAGCTATACCAGAACCTCCAGCTGAGGTGAGCTCTGTTGAGGTCATCAGGACGGTGGGACAGAGCAGCCTCATGATTGGTTGGGAGAGACCGCCACTGGATGAGCTGGGCTGCAGCAACGGAACCTTTGTGTATGGATACATGATCTATGTAGAAGGGGAGTTCCACAAGTCTGTCATGAGCTCTGCATGCACGAAGTGTATTCTGGAGAATCTGGATCTGTCCGGCCAGGTCCACATCAGTGTTCAGACCCTGGGCTCCAACGGTCTCTATGCGGAGAAGGTCCACCTCATCTACAGGGGAAAACACACCCAGTTTAGGACAGATCACACCCGTGTCAACACAGCTTCTGCTGCTCCCTGCACAGACCCTGCCTACCGAGACTGCAGGACTCCGCCCCCACACCGACACAATGGCTTCACCCAACCACTTGTGGCCATCTACAACTACAACCCTCTGAAGGACAGTCCTAACCTCCACCCCAGCAGAGAGCTGGCCCTTAGAGAGGGAGACACCGTCATGCTGCTAGGCAACCCACGCAACGACGGCTTCTGTCAGGCCGAGGTGAATGGCAGACGAGGTCTGGCTCCTGTGGCGTTACTAGAGGAAGTTCCTGTTCCAGACAGACATGTAAGCCCCGCCCCTCCCCAATCTTCTCCTGAGAGAGGAGCAGATGATAGGCCACTGTGCCTgccaatcagagagagaacaagatgGGCCGCTGTGACTGTCAATCAGTGAGAGAACAAGATGATGGGCCACTGTGGCTGCAAATCAAAGAATGCTTACCTGCAGAGAGATTATAGTGGCCAGAGTTAATGACATCGTCAAACACTGCCTGCTTGTGACACAAACGTTCATAACCGCTCGCTGCCCAAAGTAATTTGAAATGGAAGGCTACAGTAGAGCATCAGCCTACATGTGGGAAGTTGTGTGGCCCAGTTTGACATTGTGCTTCGATGGACAGTTCCTTATAGCCTACATAATACTCACTGAGATTGTCGAATCACCTCTAACTGTCACCTCTATCAAAATTATCTCTAATCACCTCTATCAAAATCCCTACTGTTCCGTGTGTAATCTCTCATGGACAGACGCACGTAATATAGCTGCTATTGTAgtgtctgtcaacagactgtgggatgcGACGACTATCAAGGAACTTGATCAGTGATATTTCATCACTGATAATTTTGGACAAATTACGATTTCGCATCTTTCGAATTTCGGAAGGGGAGGGAACATTTGGCCCATAGACTTGCCTGTAACTTGCAAAGGCGGGTGGAGCTACTGCCCTGCTTCCACTGCTTGCTCTAGTCTCTTTTCAAACACATCTTCCAACAATAATAACACTGGGTTTCCAAGATTATTCTGTATGTGACAAGTGTCAAAAAGGTCAAAGGTTGGCCTAATGGATCTGACAACCTGTCTGTTATCAAGTGCATTCATGGTAATAAAGCTAGGCCATTTTACTGGATCCTTTATCAAGCCAAATAGGATAAAAAGAGGTCCATACCAAAGACTTGGATATTTCAGTTCTTTGTcgttatacactgaacaaaaaatagcaatgcaaaatgtaaagtgttggtcccatgtttcatgagttgaaatgaaagatcccagaaatgttccattcacATAAAAAAATCATATCTCCCTAATTTGGTGCAGAAAtttgttttacatccctgttagtgagcatttctcttttggcaagataatccatccacctggcagctgtggcatatcaagaagatgattaaacagcatggtcattacacaggtgcaccttgtgttaggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2591579 lncRNA upstream 1143 25816909 ~ 25819292 (+) True LOC110504413
TU2591462 lncRNA upstream 233707 25581993 ~ 25586728 (+) False si:dkey-74k8.4
TU2591463 lncRNA upstream 236551 25557578 ~ 25583884 (+) False si:dkey-74k8.4
TU2591466 lncRNA upstream 237953 25557578 ~ 25582482 (+) False si:dkey-74k8.4
TU2591477 lncRNA upstream 238453 25581542 ~ 25581982 (+) False si:dkey-74k8.4
TU2591652 lncRNA downstream 113155 25951652 ~ 25951961 (+) True G2265731
TU2591668 lncRNA downstream 139388 25977885 ~ 25978096 (+) True G2265743
TU2591671 lncRNA downstream 144091 25982588 ~ 25984895 (+) True G2265746
TU2591686 lncRNA downstream 189824 26028321 ~ 26029603 (+) True G2265758
TU2591695 lncRNA downstream 200924 26039421 ~ 26039783 (+) True G2265766
XM_036969804.1 mRNA upstream 425 25756889 ~ 25820010 (+) False LOC110504413
XM_036970073.1 mRNA upstream 75921 25741463 ~ 25744514 (+) True LOC118946029
XM_036970031.1 mRNA upstream 111231 25703755 ~ 25709204 (+) True LOC118946024
XM_036970028.1 mRNA upstream 116688 25680193 ~ 25703747 (+) False LOC110504850
XM_036970030.1 mRNA upstream 116688 25680193 ~ 25703747 (+) True LOC110504850
XM_021583711.2 mRNA downstream 42126 25880623 ~ 25930604 (+) False LOC110504854
XM_036969972.1 mRNA downstream 71174 25909671 ~ 25930604 (+) True LOC110504854
XM_036969568.1 mRNA downstream 142425 25980922 ~ 26117728 (+) False LOC110504415
XM_036969569.1 mRNA downstream 142425 25980922 ~ 26117728 (+) True LOC110504415
XM_036970441.1 mRNA downstream 374512 26213009 ~ 26276405 (+) True LOC110504418
TU2591497 other upstream 193579 25625145 ~ 25626856 (+) False G2265625
TU2591501 other upstream 193579 25625145 ~ 25626856 (+) True G2265625
TU2591464 other upstream 234368 25581993 ~ 25586067 (+) True si:dkey-74k8.4
TU2591263 other upstream 576106 25215651 ~ 25244329 (+) True G2265425
TU2589999 other upstream 1629400 24190750 ~ 24191035 (+) True G2264345
TU2591669 other downstream 139638 25978135 ~ 25978638 (+) True G2265744
TU2592624 other downstream 451228 26289725 ~ 26292004 (+) False LOC118946064
TU2592627 other downstream 451228 26289725 ~ 26291661 (+) False LOC118946064
TU2592632 other downstream 451228 26289725 ~ 26291556 (+) False LOC118946064
TU2592622 other downstream 451328 26289825 ~ 26292004 (+) False LOC118946064

Expression Profile