RNA id: XM_036969972.1


Basic Information

Item Value
RNA id XM_036969972.1
length 1898
RNA type mRNA
GC content 0.46
exon number 7
gene id LOC110504854
representative True

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 25880623 ~ 25930604 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aagggggagagaggagagggagaagcagagggagaggaacTTCGAGGCTCCACATAGATCGAGAGAGTAAAAGAACGAAAGAAAGATAGCGGGCGTCGTTGAGGTAAACCATTCAGAGTCAGATGACAGGATCAgtggaaagagggacagagagagagagggagggagggagtgagggaggcagTGTGAGAGCTAACTATCAGACACGTTACAGACCTCTGTAGACAGACAGAACGTAGACAAGACAGTTTCCACTGTGACAACATGGGCGCTGTGGTGGGCACATTAACCATGGGGGAGAGGAccaagggggagaggaggaggccatCCAGAGATAAAATAGATGATGATTTTGAGTTGAGCATTGTGTGTCATCGGCCAGAAGGGCTGGATAAACTAGAGGCTCAGACCAACTTCAGCAAGCAAGAGCTGCAAGTGCTCTACCGAGGCTTCAAAAACGAGTGCCCTAGTGGGGTGGTGAATGAGGACACCTTCAAACAGATATACGCCCAGTTCTTTCCCCATGGAGATGCCAGTACCTACGCACACTACCTGTTCAACGCCTTTGACTCAGCACACAGTGGATCCATCAAGTTTGAGggCTTTATCATGGCGTTGTCCACCCTGCTGAGGGGTTCAGTGAGGGAGAAACTGACGTGGACATTCAACCTGTACGACATCAACAGAGATGGCTACATCAAcaaggaggagATGACAGACATCGTCAGTGCGATATATGACATGATGGGAAAGTACACCTACCCTGCCCTGAAGACAGACACTCCCAAACAACATGTGGATGCTTTCTTCCAGAAGATGGACAAGAACAGAGATGGAGTAGTCACTCTGGATGAGTTCATTCTGTCCTGCCAGGAGGACGAAAACATCTTGAGATCCCTGCAGCTCTTCAAAAATGTCATATAGACCacacagagaaaaggagagaaaagacacagagaaagaaagaccgGGAGGAATTGGAAGAGATGCTTGAGCTGTGAGAAGGAAAAGCAGCCCGCCATTTAATGGAAAAAAGAGGCACAAATAAACTTTGTTGTCACCATGGTTACGAGAGGTACTCAACTCCGGCTGCCCAACAACAGCTATACACACCAGTCGTGTGGCACAGTGTCTCACCATCATGTTACCATGGCAGTGACCATCAACGTGCTGGGTTATGACCCTTGCcattgacctctgacccctgtaccTGTTTTTGAACTTCCTGTGACTCTGTAACCTTTCACCCTAGTCCTCTCTGTCTTGTTCTGTTGATGTTGTTATGGTTACTGATCTCTCTGAGAGTGTATATCACACCTGTTAGTGTAcctactgacaaacacacacaaagattAAGGCATACACACATACCTTGGATTGAATCCTCAATCGACTACCAAATAACAAATACACAATCAATACATTTTCATCTGTAAAATTCATCTGATCGGTATTTGACCTTtaagaaaaatacatttgaacCAAGTCAGTCTTAACCCTGCTAAAGGCAGAACTCCTACAGAATGTGTGTTAGTGTTATTCAATGTTTTTGGTGTTGTGGTGACTTGTGTCATAGTGTTTTGGGCTTCTATCTTTCTGTCTGCAATGAGCTCTTTTCATCTGTGTCGTGGTTGGTCTCTTTGTCTGTCAATCTAAGTCATGGCCAGACGACATCCCGCCCACAGAGCCTGGATTGGATGTTATGTGGCCTATGATAGACATATACAGTGGTAGGAAGTTATTGCAAGTCCCATTTTGAAGTGTATTCTTATGTGGGATATTACGACTGTACAGTAACAACTCTCAAGACAATACCCAACCACTCACTgtgaccaaagagagagagagagaaagagaccttgTCGCTGAGAATACAGGAATAAAGCCATGAGAGATGA

Function

GO: NA

KEGG:

id description
K23855 KCNIP; Kv channel-interacting protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2591609 lncRNA upstream 73297 25835921 ~ 25836374 (+) True G2265700
TU2591607 lncRNA upstream 84942 25824371 ~ 25824729 (+) True G2265698
TU2591579 lncRNA upstream 90379 25816909 ~ 25819292 (+) True LOC110504413
TU2591462 lncRNA upstream 322943 25581993 ~ 25586728 (+) False si:dkey-74k8.4
TU2591477 lncRNA upstream 327689 25581542 ~ 25581982 (+) False si:dkey-74k8.4
TU2591652 lncRNA downstream 21048 25951652 ~ 25951961 (+) True G2265731
TU2591668 lncRNA downstream 47281 25977885 ~ 25978096 (+) True G2265743
TU2591671 lncRNA downstream 51984 25982588 ~ 25984895 (+) True G2265746
TU2591686 lncRNA downstream 97717 26028321 ~ 26029603 (+) True G2265758
TU2591695 lncRNA downstream 108817 26039421 ~ 26039783 (+) True G2265766
XM_036969803.1 mRNA upstream 71174 25820435 ~ 25838497 (+) False LOC110504852
XM_036969802.1 mRNA upstream 71174 25820488 ~ 25838497 (+) False LOC110504852
XM_036969804.1 mRNA upstream 89661 25756889 ~ 25820010 (+) False LOC110504413
XM_036970073.1 mRNA upstream 165157 25741463 ~ 25744514 (+) True LOC118946029
XM_036970031.1 mRNA upstream 200467 25703755 ~ 25709204 (+) True LOC118946024
XM_036969568.1 mRNA downstream 50318 25980922 ~ 26117728 (+) False LOC110504415
XM_036969569.1 mRNA downstream 50318 25980922 ~ 26117728 (+) True LOC110504415
XM_036970441.1 mRNA downstream 282405 26213009 ~ 26276405 (+) True LOC110504418
XM_036970342.1 mRNA downstream 360277 26290881 ~ 26291670 (+) False LOC118946064
XM_036970339.1 mRNA downstream 368171 26298775 ~ 26483992 (+) False LOC110504416
TU2591580 other upstream 84131 25824040 ~ 25825540 (+) True LOC110504852
TU2591497 other upstream 282815 25625145 ~ 25626856 (+) False G2265625
TU2591501 other upstream 282815 25625145 ~ 25626856 (+) True G2265625
TU2591464 other upstream 323604 25581993 ~ 25586067 (+) True si:dkey-74k8.4
TU2591263 other upstream 665342 25215651 ~ 25244329 (+) True G2265425
TU2591669 other downstream 47531 25978135 ~ 25978638 (+) True G2265744
TU2592624 other downstream 359121 26289725 ~ 26292004 (+) False LOC118946064
TU2592627 other downstream 359121 26289725 ~ 26291661 (+) False LOC118946064
TU2592632 other downstream 359121 26289725 ~ 26291556 (+) False LOC118946064
TU2592622 other downstream 359221 26289825 ~ 26292004 (+) False LOC118946064

Expression Profile