RNA id: XM_036969568.1


Basic Information

Item Value
RNA id XM_036969568.1
length 5957
RNA type mRNA
GC content 0.52
exon number 51
gene id LOC110504415
representative False

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 25980922 ~ 26117728 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGCTTTCATATACAGAACAAAATGCAGAAGTGAGAGGTAGAGTGGAAAACGTATCTCAGAcacccaaagagagagagagagagaggggaaagagaagcaGTCATGGCTCCTTggatgaggaccaccacagagcGGTATGGCGTAGTAATGTGGAATTTCATTGGCCTTGGAGAGAAGCAGCTGTCTCTGGAGATTGGGGACACGGTCCACATCCAGGAGACCTGCGATGGCTGGTATAAAGGCTACCTGGTCAGGAACAATGATCGACAGGGCGCGTTCCCGTCCAGCATTGTGCAGCTGAGGAAGGTCATCATTGAAAAGCGAGGGGATCAGGAGGTGGTGTTGTCAGCAGAGATGCCCCTAGTGAAGGAGGTGACCACCACTCTGAGGGAGTGGGGAAGCATCTGGAAACAGCTCTACGTGgccAATAAGAAGAACCGTGTGGTGCAGGTCCAAGGGCTGATGTGGGATTTGATGGAATGGCGTTCCCAGCTCTTGTCTGGCACGTTGCCTAGCGACGAGTTCAAGGAGCTCAAACAGAAAGTCACCTCCAAGATCGACTATGGCAACAAgATCTTGGAGTTGGACCTGGTGGTGCGGGATGTGAACGGGAACATGCTGGACCCGGAAAACGCCAGCGTGATTAGCCTTTTCCGAGCCCACCAAGACGCCACCACCAAGATCAACGAACGCATCAAAGAGGAACAGGTcagacagagaTCCAACATTCAGACGGACCACTCAGTAATCTCGGCCCGGATCCAGTCCTCTCCCACTCACAGCCTCTATGTCTTTGTCCGGAACTTTGTCTGTCGGATTGGAGAAGATTCTGAACTCTTCATGTCCCTCTACGACCCCAACAAGCAGACCATCATCAGTGAGAACTACCTGGTTCGCTGGGGCAGTAAAGGCTTTCCTAGGGAGGTTGAAATGCTGAACAACTTGAAGGTGGTCTTTACAgaCTTGGGTAATAAGGACTTGAACAGAGAGAAGATCTACCTGATCTGTCAGATAGTGAGAGTGGGTCGTATGGAACTGAAGGAGACCAACACCAAGAAGTGTACCCAGGGCCTCCGCAGGCCCTTTGGAGTGGCAGTGATGGACATCAGTGATATCATCAAAGGAAAGATAGAGTGTGATGAGGAGAAGCAGCATTTCATCCCTTTTTTTCCGGTCGTGGCAGAGAATGACTTCCTTCACCCCCTGCTGAACAAGGTGACAGCGTCACGAGGAGACAGTGGAGGACAAGGTCTATGGGTGACGATGAAGGCCCTGGTGGGTGACATCGTCCAGATCCGTAAGGAGTACCCCCACCTGGTGGACCGCAGCACGGTGGTGGCCCGTAAACTGGGCTTCCCAGAGATCATCATGCCGGGGGACATCCGCAACGACATCTACCTGACGCTGTGGGCCGGGGACTTTGACAAGTACAACAAGACCAGCCAGAAGAACATGGAGGTTATCATGATGGTGTGTGACGAGGAGGGCAAGATTGTGTCGaactctatctgtCTGGGAGCGGGGGATCGACCGCTCAACGACTATAGATCTGTCATCTACTACCAGGTCAAACAACCACGCTGGATGGAGACGTTCAAGGTGGCCATCCCTCTGGAGGAGATGCACAGGATCCACCTGCGCTTCATGTTCAGACACCGCTCCTCTCAGGAGTctaAGGATAAGAGTGAGAAGAACTTTGCCATGGCGTTTGTTCGCCTGATGAAGGAAGATGGAACCGTGCTGAAGGACGGGCTTCATGACCTGGTGGTCTTCAAGgGGGACAGTAAGCGTATGGAGGATGTGAACTCGTACCTGTCCCTACCCTCTACGCGTTATGTGGACGTTCACAAGACGGGGACACTGAGCCGCAGCACCAGCAGTGTAGGAGGCCTGTCTGTCAGCTCCAGAGACAGCTTCACCATCTCAACCCTCGTCTGCTCCACCAAGCTCACtcaaaatgTGGGCTTGCTGGGTCTACTGAAATGGAGGACTCGTCCTGAGCTCCTCAAAGAAAACCTGGAGAAACTCAAGATCATCGACGGAGAGGAAGtggtcaagTTTCTCCAGGACACTCTGGATGCTCTGTTCACCATCATGATGGAACACTCCCAGACTGACGACTACGACATCCTAGTGTTCGACGCCctgatcTACATCATTGGTCTGATAGCAGACAGGAAGTTCCAGCATTTTAACACGGTGTTGGAGGCCTACATCAAACAACACTTCAGCGCCACGCTGGCCTACAAgaAGTTGATGTCAGTGTTGAAGAGGTATCTGGATGTGTCCAGTCGAGGGGAGCAGTGTGAGAACTACCTACGCACCCTCAAAGCCCTGGAGTACATCTTCAAGTTCATCGTCCGCTCACGCATGCTTTACTctcagttgtaTGAAGGAAAAGAACAGGAAGAGTTTGAGGAGTCTCTTCGGAGACTCTTTGAGTCCATCAACAACCTGATGACGAGTGACCAAAACACTACCGTCTTACTGCAGgtggctGCTCTGAAGTACCTACCAACAGTCTTGCAGGATGTCGAGACAGTGTTTGATGCCAAACTCCTGAGtcGGTTGCTGTATGACTTCTACACCTGTATCCCTCCTGACAAGCTTCAGAAGCACAAGGTGGCCTCCATGACAGAGATTGTCAGCAGCAAACTCTTCCAGAAGCAGGAGTGCCGTGACATTCTTCTACCCATGATGCTTCGGGAGCTGAGTGGAGCGCTGAAGGACATGGGGGAGGGGCCTCATGACGAGCGGAGGAACAGCGTGGAGCTGCTCAACAACATCCTGGAGGTCCTGAGCAGAGACAAtgtgggtGACACATTCCAGCATATTCAGGACATTGTGGTCAGTCTCCTCAGGACCATCAACCGTACAGTCATAACCATGGGTCGTGAACACGCCCTGATCtctaggGTGGTGGCCTGTATGACGGCCATTCTGAGTCAGATGGATGACAGCCACTACTCCAGCTACCTAGAGACCTTCTCAGGCACCACCGACCTAGTGGACTTTCTGATGGAGACGTTCCTACTGTTTAAGGATCTGATTGGGAAGCACGTCTATCCCTCTGACTGGATGGCTATGATCATGGTGCAGAACAGGGTGTTCCTCAGAGCAATCAACACCTACGCTGATACCATGAACCTCAAGTTCCTCAACAACAACGACTTTGAAGTGCagTTGTGGAATAATTACTTCCATTTGGCCGTAGCATTCATTACCCAAGAGTCCTTGCAGCTCCAGCACTTCTCCTCAACCAAGAGGAACAAGATCCTAAcaaaGTATGGAGACATGAGGAGACTCATTGGTTTCGCCATACGGGACATGTGGTACAAACTGggtgggaATAAGATCTGTTTTATACCTGGGATGGTGGGTCCTATCCTGGAGATGACTCTGATTCCTGAGGAGGAGCTGAGACGAGCCACCATCCCCATCTTCTTCGACATGATGCAGTGTGAACACACAGTCTCCACACACTTCCACAAGtttGAGAATGAGATCATTCTGAAGCTGGATcatgaggtggagggaggaggaggagatgagagatacatggagctactGGAAACCATtctgttgGAGTGTGCTGTGGCGCGTCCCTTGTTGAGGCCAGAGGTCGAGCACTTCGTCACCTTGGTGAAGGGACTCCTGGTGCGTCTCCTTGACTACCGTGCGGTGATGAGTGACGACAGCCGCAACAACCGCATGAGCTGCACTGTCAATCTCCTGAATTTCTACAAGGACATCAACCGTGAAGGGATGTACATCAGataCCTCTACAAGCTGAGAGACCTTCACTTGGATGTGGAAAACTACACAGAGGCTGCATACACCCTGTTGCTTCACTCTCGCCTgctcaagTGGTCAGACGACCAGTGCAGTCCCCAGTTTGAGTTGCGTAGCTGTCAGACCCAGCGCCAGCTGAAGGAGAACCTCTATGACAAAATCATCGGACACTTCGACAAGGGCAAGATGTGGGAGGAAGCCATTACTCTGTGTAAGGAGCTGGCTGACCAGTATGAGATGGAGGTGTTTGACTACGAGCTGCTCAGCCAGAGTCTGaagcAGCAGGCTAAGTTCTATGAGAACATTATGAAGATCCTGAGGCCCAAGCCAGACTACTTTGCAGTGGGATACTATGGACAGGGCTACCCTCCCTTCCTCAGGAACAAGGTGTTTATCCACCGGGGGAAGGAGTACGAGCGTAGAGAAGACTTTCAGAACCAGCTGATGAGTCAGTTCCCCAGCGCTGTCCGTCTCAATATCACCACCATGCCTGGAGACGACGTCAGACTCTCCCCGTTGCAGTACATCCAGTGTTTCACTGTTCAGCCCGTCCTGGAAATCCCACCTCACCTGAAGAACAAACCAGTCCCTGACCAGATCAACAACTTCTACAAGTCCAACTATGTGCAGCGTTTCCACTACTCAAGACCAGTGAGGAGAGGACCAGTGGACCCCAATAATGAGTTTGTTtccaTGTGGATTGAGCGCACCACATTCACCACGGTGTACAAACTCCCTGGGATCCTGCGCTGGTTTGAGGCCACAGACATGAAACATaccaCCATCAGTCCTCTGGAGAATGCCATAGAGACCATGGAGAGCACAAATGACAAGATTCTCACCATGGTAAACCAATACCAGGCCGACGACGCCCTTCCCATCAACCCCCTCTCCATGCTGCTCAACGGCATCGTGGACCCCGCTGTCATGGGGGGCTTCGCCAAGTACGAAAAGgccTTCTTCACTGAGGAGTACAACCTGCAACACCCAGAGGACCGAGATAAGCTTTATCGCCTCAAAGACCTCATCGCATGGcagATCCCGTTGCTGGGGGGAGGGATCTCTCTACATGGTAAGAGAGTGACAGACGACCTACGACCTTTCCACGAGCGCATGGAGGAGTGCTTCAAACACATGAGGAAGAAGGTGGAGAAGGAGTACGGCGTGAGGGACCTgCCGGATATGGATGAGAGGAAGTCAACTCGTCCGCGCTCTGTCCTTCGCTCCTTCCGTCAGTCTGTCATCTCCATCTGCTCCCTCCAGGGGTCTGAGTGTGGGACCCCCACCAAACCTTacccagacagtggTCTCCCTGAAACGGTGTCCCCCCGGACCCCCACCCTGCAGCGCTCCAGTGGGAGTATGAGcatgggggaagagggaggggccGATGGGGAGGTGAAACTCAGGAAGTCCAAAAAGAAAAGGAAGAGGAGCAGCATGATCTTCAtcccagaggagagagacaggaccaaCACACTGGACAGCAAacggCTGTCCAAGAAGCAGGAGTTCCGCAGTGACACCAACCTGTCTGAACCCTGTCAGGGAAATGACTCTCTCACCAATGTCAACTCCAGGTCTCTGCCTGCTATTACAGgtctgtctctgtctgtggtcAACGGTAGTGAGGAGGCGGAGTCAGCCCGGTCCAGGAGGGACAGTAAGAGCATGTCTGTGTGTCTTCCTGGTGACCGTACCGCTGACAGACGCTCCAAAGGGGTTATCAGCCTGCTGTTCGGggccaagAGCAACAAGTCTGAGCAACAGAAAGACAAGTCGTGTACTGACCCAGGCAAAAAGAACGTCAGTCATTTCTAACAGCCTCAAGCATGATGTACCCTCAGTGCCTTTACACCTGCTCTGCTCTGAATGCCAGTCAACACAAGGGGTTGTTGCCTTGCTCCTCTTTGGAAAGAGCCATCTGATCAGCTTTTTCATCAAGACTTGTTTGCGCTcccgcaggcacacacacacatagagagagagatggagagacacagaCTTGATCTCTGATGAAATTCTGCGTAGCATGCTTTCACACTTCTGCTCTCACATCTTTTACAATcaatcaaaaatacattttccttgactGCCTTTTTTTAATGTAACTTTCAAATTTGATTCAACTTATGAAACAATGAATAAAAAGATATCCAATGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2591668 lncRNA upstream 2826 25977885 ~ 25978096 (+) True G2265743
TU2591652 lncRNA upstream 28961 25951652 ~ 25951961 (+) True G2265731
TU2591609 lncRNA upstream 144548 25835921 ~ 25836374 (+) True G2265700
TU2591607 lncRNA upstream 156193 25824371 ~ 25824729 (+) True G2265698
TU2591579 lncRNA upstream 161630 25816909 ~ 25819292 (+) True LOC110504413
TU2591734 lncRNA downstream 4869 26122597 ~ 26122929 (+) True G2265802
TU2591747 lncRNA downstream 21561 26139289 ~ 26139589 (+) True G2265814
TU2591756 lncRNA downstream 38616 26156344 ~ 26156543 (+) True G2265819
TU2591757 lncRNA downstream 39158 26156886 ~ 26157116 (+) True G2265820
TU2592583 lncRNA downstream 97040 26214768 ~ 26214985 (+) True G2266454
XM_021583711.2 mRNA upstream 50318 25880623 ~ 25930604 (+) False LOC110504854
XM_036969972.1 mRNA upstream 50318 25909671 ~ 25930604 (+) True LOC110504854
XM_036969803.1 mRNA upstream 142425 25820435 ~ 25838497 (+) False LOC110504852
XM_036969802.1 mRNA upstream 142425 25820488 ~ 25838497 (+) False LOC110504852
XM_036969804.1 mRNA upstream 160912 25756889 ~ 25820010 (+) False LOC110504413
XM_036970441.1 mRNA downstream 95281 26213009 ~ 26276405 (+) True LOC110504418
XM_036970342.1 mRNA downstream 173153 26290881 ~ 26291670 (+) False LOC118946064
XM_036970339.1 mRNA downstream 181047 26298775 ~ 26483992 (+) False LOC110504416
XM_036970340.1 mRNA downstream 181047 26298775 ~ 26483992 (+) False LOC110504416
XM_036970341.1 mRNA downstream 181047 26298775 ~ 26483992 (+) False LOC110504416
TU2591669 other upstream 2284 25978135 ~ 25978638 (+) True G2265744
TU2591580 other upstream 155382 25824040 ~ 25825540 (+) True LOC110504852
TU2591497 other upstream 354066 25625145 ~ 25626856 (+) False G2265625
TU2591501 other upstream 354066 25625145 ~ 25626856 (+) True G2265625
TU2591464 other upstream 394855 25581993 ~ 25586067 (+) True si:dkey-74k8.4
TU2592624 other downstream 171997 26289725 ~ 26292004 (+) False LOC118946064
TU2592627 other downstream 171997 26289725 ~ 26291661 (+) False LOC118946064
TU2592632 other downstream 171997 26289725 ~ 26291556 (+) False LOC118946064
TU2592622 other downstream 172097 26289825 ~ 26292004 (+) False LOC118946064
TU2592623 other downstream 172097 26289825 ~ 26291661 (+) False LOC118946064

Expression Profile