RNA id: TU2592622


Basic Information

Item Value
RNA id TU2592622
length 1925
RNA type TUCP
GC content 0.45
exon number 2
gene id LOC118946064
representative False

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 26289725 ~ 26292004 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCGAAGCAGGGAGGAAGCTGTATacgaaatggagagagagagaaagagctccaTCGGGAGCTGGTGAATAATATGTATGTATTCTATacattttctgtctctctcacaccatTATCTTCGGGTCTAGGTCGATATTCCCGTCAGGGGATCGTTTTGAGTTGAAGGCACTCAAAACCGAGATGTATCGACCTTTCCTGGATATAAGAACGTGAGTGGAGCGCGAGAAGAAACCGGGAGTGAACCGGTTTGCCCCTTGCCTACTCTTTCTCTTCCCGCGTTCCAACCAAGACATTACAGCGCGCTAAGGAGCCACTTGGACCAACCTTATAAACTTGACCAATTATACCAAGTAGCCATTCAATTTGGATAGTGGGCGACATTGTCACTTTATACAGTCCAGATAGGCTACTCTGGTGTTTACGGTAATAACTCTCAATAAAGAAATCAGAGGATTCAAATTGTTAAATATATCAGAGGAATTCCGTCCTCATAATCTCATCGCTACGACCGGAGAAGCTCCTGCATGGTTTAGGCCTACATCACCGGTAACGAGACTAGACAACCTATGGTGATTTTGAGTGACTTAGACATACATGGATATGCGAAATTCAGTTCTGCGGCTTAAGGACAGGCGGCATATGGTCTGTTAGCGCGGCGGATTTAGTGCCAAAACAACACCGCCTCTCCAGAGCGCGTCCTCCCTGGGAGAGATTGGACAGAGCAAACAAAGCCTGGGGAATGCGGTCTCTGTTTCCCTGGATCTCCATCTCACCTGCGGGGACTCTACGCGGAACACACAAATTGAACGTTGACCGGGTGGACCGCCGGTGACGCGAGAGGTCATGTTGAGACAAATCCTGCTGAATTCCACCAACGCACTAGACTTCGACCTAGGGATGGCCCTCCAGACGCACGAGACCGTGTCCGTTAACGCATCTCACGGATCGGTGAACATGGCGGCGCTGCCCACGGGCAGCAGGGGCGGGATGCGGGAGGACGGGGAGCTGAACAAACCGGACCTGGCCACCTACATGATAATATGTCTGTTGCTGTTTCTGCTCGTGCTGCTCATCGTTTTCTTCATCAACTGTCAGCTGAGGAACTCTTTCTTCGCCTCCATGCCCTACGATCGGTCTCTCAGAGAGGCCCGGACCTCCTACAAGTAGAACCCGATACCAACTCAGCTGGTAACGTCTGTAGGCTTAGGTAAcgtgtgttatgaatgtgttcaTGGAGGGgtgtgttatattgactatgCATAGTCCAGACGCTGTGAGTATCCGATACGTGTTCATTTGGCACAATGACATAGAGACCTATTACGCTCCCTGTTCCAAACTGGACTAAATGTCATTACGTGTAGGTCtatattcatttttattttatttcagctttatttaaccaggtaggctagttgagaacaagttctataTAATGgtgtatgttttttgtttgtttttgaatataaaacattttatattACAGCACTGTAATACGCTCTTATGTATATCTATTGTGTAATTCTGAGCTTAACGTTTTATTATTTGTATTGTGTAAAACTATgattaaatatattatatttgtcCATCTAGTTCAATATGGCTATATGAAAATCAtagggtgatgatgatgatgatgatgatgataatgggaTGACACGGGTTGATAGATGAATATCCAAGACAAGAGGTTTCATGAATGGAATCCCTGTTTATTACGCACTTTcgtttattttttaattaagcCGACACTCACAATTGACTAGTGTAATTTCTTGCAGAACAAATGGTTTACGCTGATATTAATCGCCCGAGCCAAATTGACTATATATCCTTTTAGCCTCGCTGTCTACGCCGACCCCACTCAAATATGTTGTTCCAAAATACCACTAGATGCCAAGACAGTTTTGTCACCACAgaggagta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2592596 lncRNA upstream 64295 26225297 ~ 26225530 (+) True G2266467
TU2592584 lncRNA upstream 73719 26215866 ~ 26216106 (+) True G2266455
TU2592583 lncRNA upstream 74840 26214768 ~ 26214985 (+) True G2266454
TU2591757 lncRNA upstream 132709 26156886 ~ 26157116 (+) True G2265820
TU2591756 lncRNA upstream 133282 26156344 ~ 26156543 (+) True G2265819
TU2592676 lncRNA downstream 5155 26297159 ~ 26297884 (+) False G2266528
TU2592677 lncRNA downstream 5516 26297520 ~ 26298175 (+) True G2266528
TU2592733 lncRNA downstream 95315 26387319 ~ 26387861 (+) True G2266577
TU2592738 lncRNA downstream 102852 26394856 ~ 26396411 (+) True G2266581
TU2592741 lncRNA downstream 113709 26405713 ~ 26407952 (+) False G2266584
XM_036970441.1 mRNA upstream 13420 26213009 ~ 26276405 (+) True LOC110504418
XM_036969568.1 mRNA upstream 172097 25980922 ~ 26117728 (+) False LOC110504415
XM_036969569.1 mRNA upstream 172097 25980922 ~ 26117728 (+) True LOC110504415
XM_021583711.2 mRNA upstream 359221 25880623 ~ 25930604 (+) False LOC110504854
XM_036970339.1 mRNA downstream 6771 26298775 ~ 26483992 (+) False LOC110504416
XM_036970340.1 mRNA downstream 6771 26298775 ~ 26483992 (+) False LOC110504416
XM_036970341.1 mRNA downstream 6771 26298775 ~ 26483992 (+) False LOC110504416
XM_036970494.1 mRNA downstream 833616 27125620 ~ 27174120 (+) True LOC110504898
XM_021583773.2 mRNA downstream 1407685 27699689 ~ 27711246 (+) False LOC110504902
TU2591669 other upstream 311187 25978135 ~ 25978638 (+) True G2265744
TU2591580 other upstream 464285 25824040 ~ 25825540 (+) True LOC110504852
TU2591497 other upstream 662969 25625145 ~ 25626856 (+) False G2265625
TU2591501 other upstream 662969 25625145 ~ 25626856 (+) True G2265625
TU2591464 other upstream 703758 25581993 ~ 25586067 (+) True si:dkey-74k8.4
TU2592687 other downstream 69988 26361992 ~ 26372483 (+) True LOC110504416
TU2592839 other downstream 299262 26591266 ~ 26620948 (+) True G2266668
TU2593017 other downstream 642716 26934720 ~ 26935889 (+) True G2266826
TU2594875 other downstream 2474873 28766877 ~ 28767729 (+) True G2268340
TU2594947 other downstream 2604751 28896755 ~ 28898079 (+) True G2268400

Expression Profile