RNA id: XM_021583773.2


Basic Information

Item Value
RNA id XM_021583773.2
length 2767
RNA type mRNA
GC content 0.51
exon number 11
gene id LOC110504902
representative False

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 27699689 ~ 27711246 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTTGCCGGGGCTTGCCTTCTTCCAAAATAACTCGTGACTGTTCCATGCTTTATTTTTGTATCTAGACTGCTACTGTACTCGTCCTGTGCTTATGGGGCGAGAATACTCCCGCAGTGAATTTTTAAATACACTAATTTAGGGCAAATATGTAGAAATATTAATCTTGAAATTAGCTTCAGGACAACGAAACATGTGGAGAGTACAAGGGTTTGTTGGAAGAGTTTTGAGCCGGTGCCATGGCACAGCCCCCCTGCGCCTGTCTCCGAATCACCATGTGGAAGATGAGGTCATCAACAACTCCACCCTGCTCTCCACCGGCTGTCACTCTCCCAACAACAGCTCTCAGAAAGGGGACGATGGAgacaagaggaggaagaggacctcTCAGTTCTGCTACGCTGGGCTCCCCCGCTACACTGCCTTGGATGCAGTTGGCTGGGGGGCAGCTGCGGTGCTGTTGATGCAGATCTGTAGGAGGATCCACTCTCAGTTCTCTGGGAGTGACCCCAACCAGAACCCCAACACAGGATGCCTGGCCATCCAGGGAACCCTGCAGAAGTCTGGCTACCGTGTCCTACTGGAGCGAATATCTCGCCGTGACGTGTTGCCCAGAGGGAGGAGTGTGCATTGTCTGCCCCAGAGACAGAGCCAGCAGGTCCCGGGCCAGCAGGTCCCGGGCCAGCAGGTCCCGGGCCAGCAGGTCCCGGGCCAGCAGGTCCCGGGCCAGCCCCAGAGCCAGGAGCACAGCAGTCCCAAGAGCAGCTACAGCATCCCTGACCAGTTTCATGAAGACCATCTGACTGCTCACagtcacctctctgaccacaaGAGGGCAACTCTGAGTCACGACGACTCTGGAACGGAGTCCTCCCAGCCTGAAGACAaccacagaaccagagacagggaACAGCCTGGGCAGCAGAATGACCATGACGCCCTGGCGGGGGCGACCCAGAACCTCCAACAGGTGGCCGACTCCAGTGTTCCTGTAGTCCTCAACATCATCGGTCTGAAGAGTGCTCAGACTGGGGACTATGAGGCAGCCTTCTCCTGTTTCCTGGCCTCTGCAAGACAGGGTTACAGCAAGGCCCAGTTCAACACTGGAGTCTGCTACGAGAAAGGCAGGGGTGTATGCAAAGACCAGGAGAAGGCTCTTGATTTCTACAGCCAGGCAGCGACAGGGGGTCACAGTCAGGCTCAGTACCGCTGTGCCAAACTCCTCCTcaacagcagagggcagcagagcACACAACAGGACCTGGATACAGCCATCAGCCTTCTGCAACAGGCTGCCTCAGCTGGGctgagagaggctcaaGTGTACCTGGGGTCTCTGTTCTCGCAGGAGCCAGTCAGAGACGGCCTTAAGTCAGTCCACTACCTGAAGATGGCAGCGGAGAGCGGAGACAGAGATGCCCTGCTGTTCCTGGGTCAGTGTTATGAGAGTGGGTTCGGGGTATCCCAGTGCTTCAGAACAGCAGTTGGTTTCTATCAGAGGGCAGCCCAGGCAGGAAACAGCCAGGCCAAGACCTTACTGGCGTCGCCCTTTGGACTGGAGGATGCCGTCCTGCGCCCTATCCGTTCTTCCCCATGTTTCTCCGTTGCTGACCGTCTGCGTGGAACTCTCTCCACCCTCAcctcccctgtccctccctccagtcACCCCACCCTCCCCCACTCCTGGAGCACAGGGAGTATGGGCCCCCCACCCATCCTgtcctccctctgccctctcaCCCCCAGCTCTGAGGGGAACGCCGTGAGGTGGACTATAGGAGCGGGATAGTTGGCACCACAATcatgaataatataatatatgccttTCAGCAGACATCTCTATCCAAAGCCACTTAGTCATATGTGCAAACATTTTACATACAGATGGtcctgggaatcgaacccactatccttGCGTTGTAAGCACCATACTCAACCACattggtcctctgtagttcagttggtaatCTATACCATAAGGTTGAAGAGGGATATCATGGTCAGATGTTTAACCTTACTGACACAACCCAGTATTTAATGTCCCTCTCAGCACTTCTATCTAgatttgtatatatgtgtgtatttgaCCACAGGTCAATTTGTTGAGGAATGTGTATAAGTATGGGGGATGCGATACATCTGAAAGGTAGGCATGTCAAAGGTGTTGTATGGCTTTACCTGTTAGCCTACTTAAAGATGCAGTCTGGGATCTTAAGCACTTAAAcatttgtatcatattgtatgaATTGAAGAAGAAAAATGTTTGCAGGTCAACATCATATGGATGACATTACACAGTTTTCAGGGACCCTGATTTTGGCCTGTGAGCGCTACTTtaaaaactactggctgaaattctACAAAAGCTCTGGAGCGTGACTAATAACTTTAGTATTGTTCCTACAAAATGTTCTCGTGGCACAATCTTGGCCAGTTTTTGTACAACAAGCTGCCCTATGGGTAGAAAGATGGTATTGTGATAAAATGTGTGCCTTACTAAGTCATTGTCAGTACAGGATCCCTTGTATTTACTTGACCCTTTCTGTGACTATTCATCTTAACTTCATTAGTTTGCTATTTCAGTTATGTCTTTGCATGTGTAAACTGTTCTTGTCTACCCATGGTATCCAGTGAGGCTGAAGAATGGGGAAAACAGAAATACGTTTTTTGGTAGTGGTGGATAATGTAGGTCATGTATATTTTCTATGCATTAGAAGCACTACTGTTGTGGAACGCACAATAACAAAATAAAGCTATTTTCTACCACTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2593849 lncRNA upstream 82121 27617257 ~ 27617568 (+) True G2267479
TU2593830 lncRNA upstream 128630 27558878 ~ 27571059 (+) True G2267461
TU2593804 lncRNA upstream 196531 27481515 ~ 27503158 (+) True G2267437
TU2593692 lncRNA upstream 393448 27305810 ~ 27306241 (+) True G2267360
TU2593684 lncRNA upstream 411817 27287631 ~ 27287872 (+) True G2267352
TU2594321 lncRNA downstream 28951 27740197 ~ 27740648 (+) False LOC110504904
TU2594318 lncRNA downstream 52877 27764123 ~ 27774417 (+) True LOC110504904
TU2594350 lncRNA downstream 69679 27780925 ~ 27781157 (+) True G2267868
TU2594353 lncRNA downstream 74968 27786214 ~ 27792670 (+) True G2267870
TU2594356 lncRNA downstream 82263 27793509 ~ 27795446 (+) True G2267872
XM_036970494.1 mRNA upstream 525569 27125620 ~ 27174120 (+) True LOC110504898
XM_036970339.1 mRNA upstream 1215697 26298775 ~ 26483992 (+) False LOC110504416
XM_036970340.1 mRNA upstream 1215697 26298775 ~ 26483992 (+) False LOC110504416
XM_036970341.1 mRNA upstream 1215697 26298775 ~ 26483992 (+) False LOC110504416
XM_036970342.1 mRNA upstream 1408019 26290881 ~ 26291670 (+) False LOC118946064
XM_036969915.1 mRNA downstream 506 27711752 ~ 27774452 (+) False LOC110504904
XM_036969916.1 mRNA downstream 506 27711752 ~ 27774452 (+) False LOC110504904
XM_036969917.1 mRNA downstream 506 27711752 ~ 27774452 (+) False LOC110504904
XM_036969918.1 mRNA downstream 506 27711752 ~ 27774452 (+) False LOC110504904
XM_036969919.1 mRNA downstream 28750 27739996 ~ 27774450 (+) False LOC110504904
TU2593017 other upstream 763800 26934720 ~ 26935889 (+) True G2266826
TU2592839 other upstream 1078741 26591266 ~ 26620948 (+) True G2266668
TU2592687 other upstream 1327206 26361992 ~ 26372483 (+) True LOC110504416
TU2592623 other upstream 1408028 26289825 ~ 26291661 (+) False LOC118946064
TU2594875 other downstream 1055631 28766877 ~ 28767729 (+) True G2268340
TU2594947 other downstream 1185509 28896755 ~ 28898079 (+) True G2268400
TU2597789 other downstream 3465644 31176890 ~ 31181107 (+) True G2271027
TU2599828 other downstream 5152190 32863436 ~ 32863779 (+) False G2272912
TU2600208 other downstream 5704844 33416090 ~ 33421685 (+) True LOC110505056

Expression Profile