RNA id: XM_036969918.1


Basic Information

Item Value
RNA id XM_036969918.1
length 4410
RNA type mRNA
GC content 0.54
exon number 14
gene id LOC110504904
representative False

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 27711752 ~ 27774452 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAGATTAGCTTTAGGTACCAGCACGGGAGGAGACCAGAGAGTGATGTGATCTGATACGGGTGGCTACGGGAGGACTCGAGCTTAAAAAGCCGGAGTCACTTCTCTGTCCTATATCAGTGTCGTCGTTGATGTGTCGTCGTGGCATAGAAGCACGATTGTCAAACGCGTTGACCTCTTGACCCCTCGTCAGTCATGATGTCCGtccacaccccccctctctctcgcagtggctcctccccttcctctgtcGGCCTGGCCAATCGCAGCGGTCCCCCTGCcgcccctcccacctccctcagCCTGCGCTCCTCCTACAACCAACTATTGGGTTGTGATGTTATAAAGGAGTCCCCTACTGCCATGGAAACGGGGAGTTCTGCCACTTTACCCAAGAGCCGCCATAGATACGCCATGACCAGCGTGTGTAGCGCCATGGGCCTGAGCGACACCCTCGCCCCTCCCGCCCAAAACCAGCCCCCCACCGGTGGCAAGCGCCTCCCCACCAAGTCCTCTTCGTCCTCTTCTctttactcctcctcctcttcctcattctTCTCCACCAACCCCAAGCTGGCGAAGAATGGTGCCAACCTGCAGAGGAAGGCCGAGACCCAGCAACAGGAGCAGAGTAAGACCAACACAGAGTTCAAAGGGCAGGATGATATCATCACCCCCATATACAGCTCTGATTGGctggagggggagaaagacaACTCCCAGGCCCCACCTCCATTCTGTCGGAGGACCAAGAGTTTTCTGGAGTTCCATGAGAAGGAAGTGGACCCTCCTAGTGTAGAAAATAAGGAAGAAGAACGTCCCAacaaggaagaagaggaagagggggaagaggatgAGAAGCACTCCTGCCCTGAGAAAGATCAGGTCAGCccggataaagagagagagagacctgaggaggagaaacagacccCAAAACAGGAGGATTACATAAAGGAAGAGGGTGCCTCTCCAACTGCTAATCAGCCTTTGCTACAGGGGGCGcaatctcccctcatctctccccaAAACAACCTCAACTGGGCCCAGCAGAACAAGATTCAGAGTTTTCCCCCTCCCCAGGGCAGAAAGGAGGCCTTAAACCAGACCCAGGATCATCCACCCAGGGTTGAGACGCCCCCCAAACCCTCCCGGAGTGCCCAGGCCCCCCCGCCCAGAGTGATCAAGGTGGAGCTGCACCCCAGCAATGAGAACCCGTACCTCCACCGCCCCCCCTCTGCACCCCCTAAGCAGcccagaggggaggagagcacCCCTCTCCTGCTCCAGACCCCCCCTGCATCCTTCAACCTGGACCCAGAGAAAGGAGCTCCTAAGCTGGGTAGTCTGAGGACAAAGGTGGAGTCTCCCCTGGAGGATGAGGACTCTAGCTGGACCACCCTGTCCCAGGAGAGCCCCTCCCCTCAGACCCCACAGGAGATAGATGTGTGGGGTGAGGGGGACCTTCCCCCAGGCTGGCGTGAGGTCACAGACCAATCAGAGGTCTATTTCTGGCATGTCCCCACTGGCACCACCCAGTACGACCGCCCTGTCGCCACGACACCCCTTGACCCACACCCTGGCTCACAGCAGGGCGACACAGTCACACTGAGACCGCCCAGCGAGCGACCTAGCAGTTTGGTATCAGACAGTTCATTGGAGCCTGTGCCCTCTCCCTCtggctcctctccctcctcctcctcctctccctctgatcTCCCTCTGCCTGACAGAGGCTTTGACAACACCAGCTACACTTGCAGTgagctgAAGGACTACCCCGTGTATCCTGACCCCAGCCTGAAAGCTTTTGAAGGAGCTACTCTTCGTTACGCCTCACTGAGACTGCACCCTGCCCAGTTAGAGACAGTGGACCTCAACAGTGCCTACATCGACCTAGAGGGACAGTCATTCCCGGTGCGTTCTCTGGGCTGGGtggagatggcagagagagatcTGACAGAGGGAAGGAGCAGTGTGGCAGTCCATCACTGTATCAGACAACTGTCCTACTGTAGGAGGGACATACAAGACTCCGCTGGGGTCTGGGGAGAGGGTAAGGACATGCTGCTGGTGCTGCAGGACCGTGATCTGACCCTGGTTGACCCTGACGACCACAGCCTGCTCCACTCTCAGCCAATCAGCAGTATACGTGTGTGGGGCGTTGGCCGAGACCACGACAGGGACTTTGCCTATGTGGCGAGAGACAAAACCACGCGGGTGTTGAAATGTCATGTGTTTCGATGTGATACCCCTGCAGAAGCCATAGCAACGAGTCTCCACGAAATCTGTTCCAAGATCATGGCTGAGAGGAAGAGTGCCAAAGCTGCTGCCGGCAGCTCATCCCAAACAGGCTCCGATGTTCCTCTCCAGGAGTTTCCCATGCCAAAGACTGAGCTGGTGCAGAAGTTCCATGTGCACTACCTGGGGATGACGTCCGTGTCTCGTCCCATAGgtatgGACATCATCAATGGGGCTATAGAGAGCCTGGTGTCCTCCACAGGGAAAGAGGACTGGACCCCTGTTACTCTGAGTGTAGCAGACGCCACTGTGGCTGTTATCAAGGAGAAGgaagaagaggaggagatactGGTGGAATGCCGTGTGCGTTTCCTGTCCTTCATGGGCGTGGGCCAGGACATCCACACTTTCGCCTTCGTCATGGACTCTGGGAACCAGCACTTCCAGTGCCACGTGTTCTGGTGTGACCCCAACGCTGGCAGCGTGTCTGAGGCTGTCCAGGCAGCCTGTGTGctGCGGTACCAGAAGTGTCTGGTGGCCCGCCCGCCCTCCCAGAGAGCTAGCTCCTCCTCCCCGCCACCCGACTCGGTGACACGCCGGGTGACTACCAGCGTCAAGCGTGGAGTCCAGTCTCTCATAGACACTCTGAAAACAAAGAAACCATCCTCAGAACTGCCCCAGCAATGACGGACAGCTCGCTGACCacacccccaaccccagcctctgGCTCTGTCACTCACACTATCGCCACAACTACGACCTACAAACACGCCTATCCAATACCAGCCATGGTAACCAACAATGTACATACATGTTAACTTATTACCACTGGGCAGACCAAAGGACGAATGGGGCTGGATAGAGACATCTGCTCAAAATAataaaaagtgaaataatctgcagaagaagaagaggaggaagtccAAGCTTCAGCATGATGAGGTGCTGGTGATTTGTGTCTCCATTGGAACTTTCCATTTACCTTTGAACTCTGCTGTGTCACTTTAGCCAGTCCACTCCTGTCTTCACCTGGCATCACCCCAGTCTTGTGGGGTATTATAACTACTGAGCTCTATGGAGTATTAGACTACTACTGAATAATACTAGACATGCCTGAGAAAAAGAACCAATCCCCATTGAGTGCTGGCTTAGTTGCATCAGGAGGTCCATTGACCTCCTTTATCTTCCCTGTTTTCTACTTGTTGGACACAGTGAGAGCAACCCTGTTCCCATCACAGTGCCTAACAGTAGCATTCCAgaatgggacacacacacatgtctcTTTAAGACGTCTGTCTCATTGACGTGGAAACGGGACATGCTTATGGGGAAAGCCAAACATCACTGACAAGGCCACTGACCAATCAGCACCATCCAGCTGCTCTACCCGACCTCGTAACCTTTGACCCCCAGACTGCAACAGAGACGTGTCATGTGATGGACTATACAGGCATGATGTAATAACATAGACAAAAAGTAAACAGAACATGGGAACCAATGTATTCCATTCCCTGGCTCGGAGTTCCATCTGGCTCACAAAACAGACTGAACCAATGTCTCATTGGAGGAGGGGTGCGCGATTGTACTATAATTACCCCTCTGATTGTAAAGTAATGATTGTATCCCCGGTTGGAGAGGAGATGTTAGAGATGAGGAGGAATGGGGTGGTGATGGTGCTGCATGTGTCTGTAATCTGAATGTGAGGAGATGGATAGAtcgttatgggggagagaggttaCTGAGGAGGGTGTCAATATGGACATAGATGCTCTGCACAAAAGCCCAACCCCACCagactatctatctatatatatatatgtatatctatacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgcacacacacacacacacaactgactCCTATTGGACCCAGGGACACCTCTCTCAACTCTGTGAATGCAATATGCAATCCAATCCCCCAAAATATAGATGTGAAAATACTGTCATTCATGTGCTCTGTTCTTCACTCATCTCGACACCATGTAAATGTAATCGGTTGTGAAAATAAATGCATTACCAAAAAATGGAAGGTCTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2594322 lncRNA upstream 9124 27702108 ~ 27702628 (+) True G2267845
TU2593849 lncRNA upstream 94184 27617257 ~ 27617568 (+) True G2267479
TU2593830 lncRNA upstream 140693 27558878 ~ 27571059 (+) True G2267461
TU2593804 lncRNA upstream 208594 27481515 ~ 27503158 (+) True G2267437
TU2593692 lncRNA upstream 405511 27305810 ~ 27306241 (+) True G2267360
TU2594350 lncRNA downstream 6473 27780925 ~ 27781157 (+) True G2267868
TU2594353 lncRNA downstream 11762 27786214 ~ 27792670 (+) True G2267870
TU2594356 lncRNA downstream 19057 27793509 ~ 27795446 (+) True G2267872
TU2594368 lncRNA downstream 43796 27818248 ~ 27825627 (+) True G2267883
TU2594422 lncRNA downstream 125019 27899471 ~ 27899830 (+) True G2267935
XM_021583773.2 mRNA upstream 506 27699689 ~ 27711246 (+) False LOC110504902
XM_021583772.2 mRNA upstream 506 27699691 ~ 27711246 (+) False LOC110504902
XM_036970184.1 mRNA upstream 506 27699691 ~ 27711246 (+) True LOC110504902
XM_036970494.1 mRNA upstream 537632 27125620 ~ 27174120 (+) True LOC110504898
XM_036970341.1 mRNA upstream 1227760 26298775 ~ 26483992 (+) False LOC110504416
trnap-ugg-72 mRNA downstream 117949 27892401 ~ 27892472 (+) True trnap-ugg-72
LOC110504908 mRNA downstream 119034 27893486 ~ 27896473 (+) True LOC110504908
XM_021583781.2 mRNA downstream 128245 27902697 ~ 27908430 (+) False LOC110504909
XR_005041164.1 mRNA downstream 128245 27902697 ~ 27908430 (+) False LOC110504909
XR_005041165.1 mRNA downstream 128451 27902903 ~ 27908430 (+) False LOC110504909
TU2593017 other upstream 775863 26934720 ~ 26935889 (+) True G2266826
TU2592839 other upstream 1090804 26591266 ~ 26620948 (+) True G2266668
TU2592687 other upstream 1339269 26361992 ~ 26372483 (+) True LOC110504416
TU2592623 other upstream 1420091 26289825 ~ 26291661 (+) False LOC118946064
TU2594875 other downstream 992425 28766877 ~ 28767729 (+) True G2268340
TU2594947 other downstream 1122303 28896755 ~ 28898079 (+) True G2268400
TU2597789 other downstream 3402438 31176890 ~ 31181107 (+) True G2271027
TU2599828 other downstream 5088984 32863436 ~ 32863779 (+) False G2272912
TU2600208 other downstream 5641638 33416090 ~ 33421685 (+) True LOC110505056

Expression Profile