RNA id: TU2594318


Basic Information

Item Value
RNA id TU2594318
length 553
lncRNA type sense_over
GC content 0.44
exon number 2
gene id LOC110504904
representative True

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 27711752 ~ 27774452 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cagacatatatacagacagacagacagcttgggAGGAGGCTCCTCTCTTTAGATAGAACacagtactacagacagacagacagacagacagacagacaggcaggcaggcagcctggGAGAATAGCCCTGCTCTTTAGATACAGTAGAACACTgtacgacagacagacagacagacagaccgacagggaGTAAGCTCCTCTCTTTAGACAGAATACAGTACTCAGACTGACGCTCACTCACCACATGCTGTTTTTAACTCAATACTGTATCTCTGTTTCTGTTCTCAAAATACTTTAAACTCATGTAGACTCGAGGCCACTGTACTCTGCAACAGAATTATGAAATGTCCTGCAGCTTGTGAGACATAATgcctaaatacacacacacacacacacacacacacaactgactCCTATTGGACCCAGGGACACCTCTCTCAACTCTGTGAATGCAATATGCAATCCAATCCCCCAAAATATAGATGTGAAAATACTGTCATTCATGTGCTCTGTTCTTCACTCATCTCGACACCATGTAAATGTAATCGGTTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2594321 lncRNA upstream 23475 27740197 ~ 27740648 (+) False LOC110504904
TU2594322 lncRNA upstream 61495 27702108 ~ 27702628 (+) True G2267845
TU2593849 lncRNA upstream 146555 27617257 ~ 27617568 (+) True G2267479
TU2593830 lncRNA upstream 193064 27558878 ~ 27571059 (+) True G2267461
TU2593804 lncRNA upstream 260965 27481515 ~ 27503158 (+) True G2267437
TU2594350 lncRNA downstream 6508 27780925 ~ 27781157 (+) True G2267868
TU2594353 lncRNA downstream 11797 27786214 ~ 27792670 (+) True G2267870
TU2594356 lncRNA downstream 19092 27793509 ~ 27795446 (+) True G2267872
TU2594368 lncRNA downstream 43831 27818248 ~ 27825627 (+) True G2267883
TU2594422 lncRNA downstream 125054 27899471 ~ 27899830 (+) True G2267935
XM_021583773.2 mRNA upstream 52877 27699689 ~ 27711246 (+) False LOC110504902
XM_021583772.2 mRNA upstream 52877 27699691 ~ 27711246 (+) False LOC110504902
XM_036970184.1 mRNA upstream 52877 27699691 ~ 27711246 (+) True LOC110504902
XM_036970494.1 mRNA upstream 590003 27125620 ~ 27174120 (+) True LOC110504898
XM_036970341.1 mRNA upstream 1280131 26298775 ~ 26483992 (+) False LOC110504416
trnap-ugg-72 mRNA downstream 117984 27892401 ~ 27892472 (+) True trnap-ugg-72
LOC110504908 mRNA downstream 119069 27893486 ~ 27896473 (+) True LOC110504908
XM_021583781.2 mRNA downstream 128280 27902697 ~ 27908430 (+) False LOC110504909
XR_005041164.1 mRNA downstream 128280 27902697 ~ 27908430 (+) False LOC110504909
XR_005041165.1 mRNA downstream 128486 27902903 ~ 27908430 (+) False LOC110504909
TU2593017 other upstream 828234 26934720 ~ 26935889 (+) True G2266826
TU2592839 other upstream 1143175 26591266 ~ 26620948 (+) True G2266668
TU2592687 other upstream 1391640 26361992 ~ 26372483 (+) True LOC110504416
TU2592623 other upstream 1472462 26289825 ~ 26291661 (+) False LOC118946064
TU2594875 other downstream 992460 28766877 ~ 28767729 (+) True G2268340
TU2594947 other downstream 1122338 28896755 ~ 28898079 (+) True G2268400
TU2597789 other downstream 3402473 31176890 ~ 31181107 (+) True G2271027
TU2599828 other downstream 5089019 32863436 ~ 32863779 (+) False G2272912
TU2600208 other downstream 5641673 33416090 ~ 33421685 (+) True LOC110505056

Expression Profile