RNA id: trnap-ugg-72


Basic Information

Item Value
RNA id trnap-ugg-72
length 72
RNA type mRNA
GC content 0.61
exon number 1
gene id trnap-ugg-72
representative True

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 27892401 ~ 27892472 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggctcgttggtctaggggtatgattctcgctttgggtgcgagaggtcccgggttcaaatcccggacgagccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2594368 lncRNA upstream 66774 27818248 ~ 27825627 (+) True G2267883
TU2594356 lncRNA upstream 96955 27793509 ~ 27795446 (+) True G2267872
TU2594353 lncRNA upstream 99731 27786214 ~ 27792670 (+) True G2267870
TU2594350 lncRNA upstream 111244 27780925 ~ 27781157 (+) True G2267868
TU2594318 lncRNA upstream 117984 27764123 ~ 27774417 (+) True LOC110504904
TU2594422 lncRNA downstream 6999 27899471 ~ 27899830 (+) True G2267935
TU2594426 lncRNA downstream 14463 27906935 ~ 27908418 (+) True LOC110504909
TU2594431 lncRNA downstream 24743 27917215 ~ 27923755 (+) True G2267943
TU2594434 lncRNA downstream 35053 27927525 ~ 27928014 (+) True G2267946
TU2594442 lncRNA downstream 60674 27953146 ~ 27954152 (+) True LOC110504911
XM_036969915.1 mRNA upstream 117949 27711752 ~ 27774452 (+) False LOC110504904
XM_036969916.1 mRNA upstream 117949 27711752 ~ 27774452 (+) False LOC110504904
XM_036969917.1 mRNA upstream 117949 27711752 ~ 27774452 (+) False LOC110504904
XM_036969918.1 mRNA upstream 117949 27711752 ~ 27774452 (+) False LOC110504904
XM_036969919.1 mRNA upstream 117951 27739996 ~ 27774450 (+) False LOC110504904
LOC110504908 mRNA downstream 1014 27893486 ~ 27896473 (+) True LOC110504908
XM_021583781.2 mRNA downstream 10225 27902697 ~ 27908430 (+) False LOC110504909
XR_005041164.1 mRNA downstream 10225 27902697 ~ 27908430 (+) False LOC110504909
XR_005041165.1 mRNA downstream 10431 27902903 ~ 27908430 (+) False LOC110504909
XR_005041166.1 mRNA downstream 10431 27902903 ~ 27908430 (+) False LOC110504909
TU2593017 other upstream 956512 26934720 ~ 26935889 (+) True G2266826
TU2592839 other upstream 1271453 26591266 ~ 26620948 (+) True G2266668
TU2592687 other upstream 1519918 26361992 ~ 26372483 (+) True LOC110504416
TU2592623 other upstream 1600740 26289825 ~ 26291661 (+) False LOC118946064
TU2594875 other downstream 874405 28766877 ~ 28767729 (+) True G2268340
TU2594947 other downstream 1004283 28896755 ~ 28898079 (+) True G2268400
TU2597789 other downstream 3284418 31176890 ~ 31181107 (+) True G2271027
TU2599828 other downstream 4970964 32863436 ~ 32863779 (+) False G2272912
TU2600208 other downstream 5523618 33416090 ~ 33421685 (+) True LOC110505056