RNA id: XR_005041166.1


Basic Information

Item Value
RNA id XR_005041166.1
length 3344
RNA type mRNA
GC content 0.47
exon number 3
gene id LOC110504909
representative False

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 27902697 ~ 27908430 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTtcattatattttttttttacgtttACCACGACAGCTTGTGTGGTTTAAAATCAAGTCAAGTTGTCAGCTTTGACACGGTAGTGCAacatgctagctaacgttaactaactCGCTAGCACAAGGCCTGCAAACTGTAGCTAGCAGAGTCAAAAGGCTGTTAGTAACAATAGCTTGCTAATGAAATCTTGACTGTCAAGATTATCCATGTCACTGGCAAGTAAACGGCCCTCTAattgatgttagctagctaactggcttGTTAGTTTAGCAACACCCCTTTCACCTGGTTAACACAACCACAGTCATAATTATCGATCAACTCCGCCCATTGCCACAATTTCTCTAATTAACATTTCATGTTAAACCTAACCTTGATTAACCACAACCTTAAATTAGGACCAAAAAGCAAGTTCTTATTgttaattttgactttgtggctatggAATCTGATTTAGTACCTGTTGTCTAAAGTTGGTCAGTGGAAACCCGTTCACCAATCATTTTATTCTACCGTTCTGAACAGGAAGACCAATTTAGCAGACAGTTTTGTCCTGTGCTTCGGACCTGTTATTTACGGTGTCTGGATCAGACTCGGCAACCAGGTTCAGGACAGTTCATTTGTACAAGGTGACAACTTGACCTCTAATGACCCTTCAGTGACACTTCTATCACCCTCTGACCTACACTACatgacaaaGTTGAAAATCATCCAAGAGGTCGTCTCCCCAGCGGTGATGTTTGTGGCGTAGGCTCAGGGTGTGTCTCACCTCCCATGGTGTTACCACCATGGACCCAGAGTCAGCCCGCACATCACAGCCCCAGGGCTCCCTTGGAAAAAGTGGGGTCTCCCTGCTATCTGGCAGGGGTTTGGGGGCAGCTCTCACCCCTCGAGGGAAACACTATGCGTGTGGTTCCATAGCTGCCTTCACCAACATCATGGTGACATTCCCGATCCAGAAAGTTCTGTTCAGGCAGCAGCTGCACGGTGTGCGGGCCAGAGAGGCTGTCGGGCAGCTCCAACGGGACGGGATGAGGAACCTCTACAGGGGGCTGCTCCCTCCTCTTCTGCAGAAGACCACCACGGTAGCCATCATGTTCGGCTTGTATGAGGACTTCTCCCATGTCTTACTGGACCAGTTGTCCACAGGCAGCGGCATTCCTGAGCTAGTGACGCGGAGCTTCGCAGCTGCGCTGGCGGGCACAGCAGAGGCTGCCCTGATGCCGTTTGAGCGGGTGCAGACTCTCCTCCAGGACCACCGGCACCACGGCCGCTTCCACAACACGGCCCACACCTTCCGGACGCTCCTAAGAGAGTACGGTGTGAAGGAGTGCTACCGCGGCCTGGTGCCAGTCTTAATAAGAAACGGTCCCAGTAACATGCTGTTCTTCGGGCTCCGCGGGCCCATCAAGGAGCAGCTCCCTGAAGCCTCCAGCCGGGCCGGCCACCTGGTCAATGActttgtgtgtggaggggtgctAGGGGCGGCGCTGGGGATCATGTTCTACCCGCTGAACGTGGTGAAGTCCCGTGCCCAGTCCCAAGTTGGTGGAGCGTTCCGGCCTTGTGGGGAGGTGTTAATGACGGTTTGGCGGGAGAGAGGCGGCAGCGTGGCCATGCTGTTTAGAGGGGCCCACCTCAACTACCACCGCTCCCTTCTCTCCTGGGGCATCATCAACGCCACGTACGAGCTGCTGCTCAAAGTGTTCTGATACCGAACGGGGGATAGAAAGAGGGGAAGGTGTAGAAAGGGGGAGCGAGAGAAAAAATGAAAGACTTGCGTAAGTGTTTGAGGGTGAGGATGAAcgcaatttttcttcctggggtccgtatagtacatcaatagacaagaaaaGCTCAAGGATAGAACTACATTAAAAAAAGGCACCTATAGCATTtctatcaatgcatacacactaACTATCTctgtcaaataggggagaggcgttgtgacGCGAGGTATTGCTTTATCTGGTTTTTGAATTGATGCTGTCTCTTGTGTTTGGCACTTGAAACtgatgtgcccactgcccacccAATAAGGTCCAGATAGTTTATGTGGGGGGGTAAGTGTCTACGGCAAGCAGAAGAGGACAGAGGGTATCTGAAAGGTGACGTTTCTCTACTGACAATGGCCATCAGTGTGAGATGAATTGCCGCTTGTTTAAAGTTACAGTATCAAAGTGAGAGGTCTGGGTCCAACGAAAGCCttcattcttttttttatttttataaatgtatCAATTGAAATGGATTTGACAAATGATTGGCATTCTGTAAGTACCTTTCCCATTGTAGTCGGATGTGGTACCCAACAAAGTTTCAGAGGCAGTTTCACAGGGGGTAAGCCTTTTCAGTGACCAAGAGCACCTCTTAAAGAACTGTTCAGTGTTTTGACCAGTGTTTCTGTGTGCATTGATTATTAGTCCCTTCGACCCCTGCTTTCCCTGCTCTGATTCTCGGACTGTGAGCTCTGCTATTTACCATGTCGGTCATCTTGGATTATGCATAGATTCGACCCTCTGCGGCGTACGATCCTAGCGGCTTGCAGTGTACGACCCTAGCGGCTTGCGACCCTAGCGGCTTGCGGCGTACGACCCTAGCGGCTTGCGGCGTACGACCGTAACTGTGTTTGTCCTGTAGGTATAGcgctcgccagcttgtagtcctaaaacacAGAAATTAGgtacctctggttcgttcagccattcctatggggAATGAATATGGTTTGGATTTTACACAGGCTTAGAAGATCTTTTACGTTGTGTTCTATGCAATATTATCAGTCCGTTAACaggacctttatgaattatgaagactgatttttttattaaataaatgCATCAAAATTAACAAGTGAcattagctgatgaagattatccCATAGAACAAAATTACaaatctcctaagcctgtgtatATCACAGACCTTTATCCAAAAACtctacaaaacatttattttgccaTGGTTCGTTGGACAAAGCCTGAGTTAGTGCCTACCAAAATCCGTTGTTACTGTTGCTCTCTATAGTGCTCTCTTTTACTTGAAAGATGATTGGTAAAAGCAGTAGCTTAGAAGCACAGGGGAACTGGACTAGGGAAGTGCTTCATTGTTATGTCATCCAATGCCAATCTAAGCATATCTTGAAAATGTTTGTCAAATGTGTGTTTAATTAGCATATTCCCGAAGTGCTACTTGTAGTGTTTGTCTGTCAAAGTGTTGACAAGTACCCATTGGTTTAAGTATAATTAAAATGTACTTGTTACCCATAACTTCTAGTCCTTCATGAAATAGactgaaaaaataataataaaaaattcaCACCAACAATACAGGAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2594422 lncRNA upstream 3073 27899471 ~ 27899830 (+) True G2267935
TU2594368 lncRNA upstream 77276 27818248 ~ 27825627 (+) True G2267883
TU2594356 lncRNA upstream 107457 27793509 ~ 27795446 (+) True G2267872
TU2594353 lncRNA upstream 110233 27786214 ~ 27792670 (+) True G2267870
TU2594350 lncRNA upstream 121746 27780925 ~ 27781157 (+) True G2267868
TU2594431 lncRNA downstream 8785 27917215 ~ 27923755 (+) True G2267943
TU2594434 lncRNA downstream 19095 27927525 ~ 27928014 (+) True G2267946
TU2594442 lncRNA downstream 44716 27953146 ~ 27954152 (+) True LOC110504911
TU2594443 lncRNA downstream 46180 27954610 ~ 27954885 (+) True G2267955
TU2594450 lncRNA downstream 47620 27956050 ~ 27956434 (+) True G2267962
LOC110504908 mRNA upstream 6430 27893486 ~ 27896473 (+) True LOC110504908
trnap-ugg-72 mRNA upstream 10431 27892401 ~ 27892472 (+) True trnap-ugg-72
XM_036969917.1 mRNA upstream 128451 27711752 ~ 27774452 (+) False LOC110504904
XM_021583783.2 mRNA downstream 44682 27953112 ~ 27954148 (+) False LOC110504911
XM_021583784.2 mRNA downstream 50308 27958738 ~ 27961819 (+) True LOC110504912
XM_036969630.1 mRNA downstream 79522 27987952 ~ 28010322 (+) False LOC110504914
XM_036970092.1 mRNA downstream 145958 28054388 ~ 28056425 (+) True LOC118946038
XM_021583792.2 mRNA downstream 148982 28057412 ~ 28065727 (+) False LOC110504919
TU2593017 other upstream 967014 26934720 ~ 26935889 (+) True G2266826
TU2592839 other upstream 1281955 26591266 ~ 26620948 (+) True G2266668
TU2592687 other upstream 1530420 26361992 ~ 26372483 (+) True LOC110504416
TU2592623 other upstream 1611242 26289825 ~ 26291661 (+) False LOC118946064
TU2594875 other downstream 858447 28766877 ~ 28767729 (+) True G2268340
TU2594947 other downstream 988325 28896755 ~ 28898079 (+) True G2268400
TU2597789 other downstream 3268460 31176890 ~ 31181107 (+) True G2271027
TU2599828 other downstream 4955006 32863436 ~ 32863779 (+) False G2272912
TU2600208 other downstream 5507660 33416090 ~ 33421685 (+) True LOC110505056

Expression Profile