RNA id: XM_021583783.2



Basic Information


Item Value
RNA id XM_021583783.2
length 708
RNA type mRNA
GC content 0.42
exon number 2
gene id LOC110504911
representative False

Chromosome Information


Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 27953112 ~ 27954152 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTAATTTCCGGTTTAAACAGTCACATTTCCGCCATCAAACACGCCGGTACTGAGAATCAAACCAAAGAGCAAGCGTAACACAAATTTGCAGAGAAATCGCAGCCATAAAATCACAACCAGCGCAGGGGTTGGGTGTTAAACCTTCACAGACCACTGAGAGATGTTCAAACTCGAGGGGTTAGGGCCGAAAATGGACCCGGAGGCGATGAAGAAAAAGATGCGACAGGACGTCATCTCGTCCGTGCGCAATTTCCTAATCTATATTGCCCTTCTCAGAGCCActCCATATATTTTGAAGAAGTTGGACAGCATTTGAGACCATCTATCTCTACAGTATTCCCACACTCCATTTACTGCATCAAGCACAATGGACATAGCGATGACAGGGGAACAAAGGGACGAGTGGCGAGCTAAACACCATCATATGGATCCTATATGGAATACTTATTTATAGGCTTCAATGAAGACAGTGCGTTGTGTCCCACATAGCACTTGAACACTAAGTAGTTGTCAGTTATAGTTTTCAAGATGTCCTCTGTTTTTGTTTACAGTTAGTGCTCAGTAACAGAAAAACATCTGATTGCATTTTGGTTTTGAGTGATACTGTACCTCCATTTGCAATGGTCCCTATCAATAAATGAGAGTGTTGTAATTGAAACGTTTGAATTTTGTTGGTCATGCGGATCACCTGCAATAAAAGGAAGACAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2594434 lncRNA upstream 25098 27927525 ~ 27928014 (+) True G2267946
TU2594431 lncRNA upstream 29357 27917215 ~ 27923755 (+) True G2267943
TU2594426 lncRNA upstream 44694 27906935 ~ 27908418 (+) True LOC110504909
TU2594422 lncRNA upstream 53282 27899471 ~ 27899830 (+) True G2267935
TU2594368 lncRNA upstream 127485 27818248 ~ 27825627 (+) True G2267883
TU2594443 lncRNA downstream 462 27954610 ~ 27954885 (+) True G2267955
TU2594450 lncRNA downstream 1902 27956050 ~ 27956434 (+) True G2267962
TU2594409 lncRNA downstream 7754 27961902 ~ 27963378 (+) True G2267924
TU2594407 lncRNA downstream 52880 28007028 ~ 28010319 (+) True LOC110504914
TU2594410 lncRNA downstream 59978 28014126 ~ 28014875 (+) True G2267925
XM_021583781.2 mRNA upstream 44682 27902697 ~ 27908430 (+) False LOC110504909
XR_005041164.1 mRNA upstream 44682 27902697 ~ 27908430 (+) False LOC110504909
XR_005041165.1 mRNA upstream 44682 27902903 ~ 27908430 (+) False LOC110504909
XR_005041166.1 mRNA upstream 44682 27902903 ~ 27908430 (+) False LOC110504909
LOC110504908 mRNA upstream 56639 27893486 ~ 27896473 (+) True LOC110504908
XM_021583784.2 mRNA downstream 4590 27958738 ~ 27961819 (+) True LOC110504912
XM_036969630.1 mRNA downstream 33804 27987952 ~ 28010322 (+) False LOC110504914
XM_036970092.1 mRNA downstream 100240 28054388 ~ 28056425 (+) True LOC118946038
XM_021583792.2 mRNA downstream 103264 28057412 ~ 28065727 (+) False LOC110504919
XM_021583793.2 mRNA downstream 103264 28057412 ~ 28065727 (+) True LOC110504919
TU2593017 other upstream 1017223 26934720 ~ 26935889 (+) True G2266826
TU2592839 other upstream 1332164 26591266 ~ 26620948 (+) True G2266668
TU2592687 other upstream 1580629 26361992 ~ 26372483 (+) True LOC110504416
TU2592623 other upstream 1661451 26289825 ~ 26291661 (+) False LOC118946064
TU2594875 other downstream 812729 28766877 ~ 28767729 (+) True G2268340
TU2594947 other downstream 942607 28896755 ~ 28898079 (+) True G2268400
TU2597789 other downstream 3222742 31176890 ~ 31181107 (+) True G2271027
TU2599828 other downstream 4909288 32863436 ~ 32863779 (+) False G2272912
TU2600208 other downstream 5461942 33416090 ~ 33421685 (+) True LOC110505056

Expression Profile