RNA id: TU2594407


Basic Information

Item Value
RNA id TU2594407
length 3069
lncRNA type read_through
GC content 0.41
exon number 4
gene id LOC110504914
representative True

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 27987952 ~ 28010322 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAGCTAATCCCCTTATCACTGTACACGACAGTGACAAGGCGTCCTCTCAGAGCCCCAGTCGCAGTGGCAGGATGAACCTCTTTTCTCTCATGCAGTCCATCAACGAACTGGACGATGAGGATCTAAGGAATGAACAGATTGCCAACAGTCACCGGCGGTCTCCAGGGCAGCGGAGGCGGAGTCATGGACGGAAGGGCCTCATGCATCAGAGGGCCCATGTGGACGGTTCACCTGAGCCAAGCAGCCTATCAGGTCCCAGAAAATGTGAAGGGGCGGGGCCAAGTAAACCTGAGTCCAGGGAAGGAGATACCAAGACGATGGAAGGACGGTagagtgagagaaggggagaatggatggagaaagagaagccTAGAGTAGACACTAATGAGAAAGAGATGAAATGTTCTGCCTTCTTTCAAGCTATAAACATGAAAGTATCACCCAAAGATATTTATATACATCATGTTActtaagccttgttcacactgcaggccttaaaAGCTAAAATCAGTATTTTTCAATTCTgttttggaatactgactgtccaaacagcaagttcagacagcagtcatttgcttACATGGCTACACTAGTTGTCATAGCAATGATGGGTGTGTGCGAgcagtggtgtaggctgattcactaatttgtttgtaaacaattaacaagcttgttagctaccacattcttgtcaaactgtcagtggctagcaagcaacaagatatgccAAATAAGTCTAAAAACCATTTGCAGGCAAATAAATCCgatttgaccgttcagacacaAGTTGCATGGCCAGGAATCCGATTAGTACCTGATTTCAACCCACCTACGAAGGTGTtttgaaatgtggcttgaaatatGTTTGTCTGTTCATACTGCAGGAAAAAGAACAGATTTGAATCGTATATGCATTTCTTTTAGTTacttcaaactgccaatgtgaacaaggctttagacTACCAACTAGCATAGCGTCACACacggagtatacaaaacattcatcggggcatggacactacaagctgtcaagcgttccacagggatgctggcaaaTGTTGACTTCAATCCTCgccacagctgtgtcaagttgagtgtgaaaaacccagcagcattgcagttcttgacacactcaaactggtgcacaTTACACCGTTCAAATGCACTCAGATATTTTGTTTTGCTGATTTCACccgctgaatggcacacacacacacaatcctcgtctcaaagcttaaaaacccttctttaaccagtctcctccccatcatctacactgatttgaagtggtgacatcaataagggatcataactttctcctggattcacctagtcagtctaccatggaaagaggtgttcctaatgttttgtgcactcagtgtataattTGATTAATTGTCATTCCTTTTGCACAATATTTCATTTTAGGTTCTTTTAATGTATCACAAACTGTTCCCCAACACATTTACTCCATTGGTAGTGATGGCTCACTTTTTTTTATGTCACTGCAGTATTACGACACCAATAATTATGTGTATGACCAAAGCTTAGTATTTCTGGTTAGCCTTACCTACTGTCACTGAAGTTGGAATGTATGTACATTACCATACTGCATGTGTAGTGTGCCCTCCTTTTCTCCTCATGACCTCTATGCAATAATGAATTTGTCTTCTCTGAATTTGAGGCTGCCAGTTCAGGTTGTGTATTTTAAGTGCCCTTATTTTATGGGTTTTCTTTCTTACAAACGCACATACAAGCTAGATCTTTTTAGAGTTTATCAAAATGGCATGCTGTCTCAATGATCCAAAACTTGAATTTTCTCACTGATGTTTCAAAATAGTAATATTGAGTGACTGTTTTAAGCTGTGTTATTATTCTGGACCAATGCATGACCAATCCAAGGGCACCAGACTGTTTGCCAATTGTGTTCCTCTGTGCCAATGAACTTTCTGTCCTTTGAGTTTTAGGGCCCAATTCAATCAGATCTGCTTCAGCAGACAGCCGCGTAGCTAATGTTTTGACGGTGTtggaggtggaactgcgttagagctgtcaaattcaCAAGTGGCTCCCAGCATGCAGTCGCGTTAAGAAAAAACCCATGCCGACTTGTTTACAagttggaacactggaatgtgagatgtaatccaCACCTCCATTATGCTGATTAGGAATCCTCATTTATTTTGTTAAATGATTTTTCAATTTGAGCGTAATTATTTCTCTATAGCCTTCACGTTGTCATTCTGAACTTCCTCCGTGACTGCAGCGGATTTTGTTACAATGATCGAGCAGCTGCTCACTGGTTTGACAGTTCCACTCACCTGCGACACCACCAAAACATCCGCTAAGCGGTTTCCTGCTGTCGCCGGTTAACGCTTGAACTGATTGAATGTAAAGCCTTAATCTAAAGACAACAGATTTGAGGATCATTAGAAAACTCGTACCctctttttttaattttttatcttGGGTGTTAAATCCCTTTAAGTTATTGGAGatgttttatttctttttttaaatatttcacTGTCGTTCCACAAATAGCCTTGCTGTAGGAGTGCCTTGGACGTGGGACCCAAATAACCAAGTTATTTCCCGAATACACAGACCCTGATTTAAAGTATTTATAATATCTACGGTATATTGCTTTTTCTCCGAGCTGGTGGCTTTTTTTCATATTGTTTTAACGGTTTGTCTTCATGACCAGTGTGCATGTTAGCATGATTTTGTTCAGGTTACGTTTTTTGTGTCTTTTGGACTTTTGAGGTAGTTTTGGCATTATGGTGAAAGTTTCTGAACTTTCCTCAGTTAAACTGAATGGTTcttcattgatccatttttttttttttaagtcttcAGCTGGCTGTTGTTTTTATATTCATAATTGAAACAAGTTTCCACCACATCATCCCATTGACACTGCCTGAGCCGACCTCTGCTGTACTGCAATCAAATCCATCAATGACCTGTATCTGTCATTGTTCTGGATAAGTGTTATCTCCCCCACTGTTTTCAGCACATTTGTTTACAGCTATACTGTATGAGTGAATAAATGTTTCAGAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2594409 lncRNA upstream 43650 27961902 ~ 27963378 (+) True G2267924
TU2594450 lncRNA upstream 50594 27956050 ~ 27956434 (+) True G2267962
TU2594443 lncRNA upstream 52143 27954610 ~ 27954885 (+) True G2267955
TU2594442 lncRNA upstream 52876 27953146 ~ 27954152 (+) True LOC110504911
TU2594434 lncRNA upstream 79014 27927525 ~ 27928014 (+) True G2267946
TU2594410 lncRNA downstream 3807 28014126 ~ 28014875 (+) True G2267925
TU2594417 lncRNA downstream 10741 28021060 ~ 28021789 (+) True G2267930
TU2594466 lncRNA downstream 14648 28024967 ~ 28025187 (+) True G2267978
TU2594408 lncRNA downstream 19386 28029705 ~ 28030911 (+) True G2267923
TU2594486 lncRNA downstream 58306 28068625 ~ 28070758 (+) True G2267994
XM_021583784.2 mRNA upstream 45209 27958738 ~ 27961819 (+) True LOC110504912
XM_021583783.2 mRNA upstream 52880 27953112 ~ 27954148 (+) False LOC110504911
XR_005041164.1 mRNA upstream 98598 27902697 ~ 27908430 (+) False LOC110504909
XM_036970092.1 mRNA downstream 44069 28054388 ~ 28056425 (+) True LOC118946038
XM_021583792.2 mRNA downstream 47093 28057412 ~ 28065727 (+) False LOC110504919
XM_021583793.2 mRNA downstream 47093 28057412 ~ 28065727 (+) True LOC110504919
XM_036970093.1 mRNA downstream 145102 28155421 ~ 28163913 (+) True trmt12
XM_021583799.2 mRNA downstream 160142 28170461 ~ 28188340 (+) False sytl4
TU2593017 other upstream 1071139 26934720 ~ 26935889 (+) True G2266826
TU2592839 other upstream 1386080 26591266 ~ 26620948 (+) True G2266668
TU2592687 other upstream 1634545 26361992 ~ 26372483 (+) True LOC110504416
TU2592623 other upstream 1715367 26289825 ~ 26291661 (+) False LOC118946064
TU2594875 other downstream 756558 28766877 ~ 28767729 (+) True G2268340
TU2594947 other downstream 886436 28896755 ~ 28898079 (+) True G2268400
TU2597789 other downstream 3166571 31176890 ~ 31181107 (+) True G2271027
TU2599828 other downstream 4853117 32863436 ~ 32863779 (+) False G2272912
TU2600208 other downstream 5405771 33416090 ~ 33421685 (+) True LOC110505056

Expression Profile