RNA id: XM_021583792.2


Basic Information

Item Value
RNA id XM_021583792.2
length 1744
RNA type mRNA
GC content 0.41
exon number 8
gene id LOC110504919
representative False

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 28057412 ~ 28065727 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCGAACCGCTGATTCAACTCATCGGTAATATCGCTCACTTCATAGTCGTGACCAGAAGAACGAGCCGAGCTAACGTATCGGAAACGTTATAATACCAGTGCAGTCAAAGCAGCCAACGGCTGTCGACCAAGGAAAAGCGaaaataccagtagatctattgATACCCGTTTATCAACTATAAAAGTAATATTGTGAGTTGATGTAAAGCTAGCCAGGGTAGATCGCCGTACACTACAGCTAATTGCTATATGCTAGTTAGCATCACGTAGCTAGCCTTTGCTCTATCTTCGACAACCGGTCCCTACGCACTAGCAGAATGGCCTTAAAACGAATTCACAAGGAGCTGAACGACCTGGGCAGGGACCCTCCTGCACAGTGTTCCGCTGGCCCGGTTGGAGACGACATGTTTCATTGGCAAGCTACAATTATGGGGCCTAATGACAGCCCATACCAAGGTGGTGTTTTTTTCCTGACTATTCACTTCCCCACAGACTATCCCTTCAAACCACCTAAGCTTGCGTTCACCACAAGAATTTATCACCCAAATATTAACAGTAACGGCAGCATCTGCCTGGATATTTTGAGATCACAGTGGTCTCCAGCATTAACTATCTCTAAAGTACTTTTGTCCATTTGTTCACTCTTAtgtgaccccaaccctgacgacCCGTTAGTGCCAGAGATCGCCCGTATCTACAAAACAGATACGGAAAAGTATAATAGACTAGCGAGAGAATGGACAGAAAAGTACGCTATGCTTTAGGGTACAACAGAATAGCCCGGGAATGGACTCAGAAGTACGCCATGTGATAATCGGTCATGGTCGTATCAACTTGCATTATAGCTGGGAAAAAAAACTTTAaattactgtttttttttttttgcccattcGGCCGCAACCCCTTACCATCAGCAAATAACAGTAATTGATTCTTTGTTTTGCCCCCTAAATGTATTCACATCCTCTTAACAAGGACAAATGTCTCCAATACCCCTTTTTTCCCTTTACAAAATATGCCAATTGCTCTGAACTCTCAGTGAAGCATGTCTGTATAAAGCCAACCACAGCCACTTTGTGAAGAGCTCTTGATTGCTCTGAATTCACGCAGGAGGTGCCAACTAAAAATAAAGATTCTCAATGCCACCATTTCTGTATTGAGAGAATCAACATGGTTCAATCACACTTTTCCAATAGCATTAGAGAACTGATGTCTGTGAATATCATACACTTTAATCTTAAAGTTAAGATTTACCTATTTTGAATGTTCTAACGATTCCCGGGTCATTCCATGTGTATCTGAGCTACCGTTCCATCAGGCAGAAATACAGCCGGTGCAAAACTTGTCATACCGGCCTGATTGAACGGCAAAAGCTCAGATACACATGGAATGACGCAGGAATCGATAGatcagagatgcacaaaaacttaaacattcaaaatgggtgaatcttAACTGTTTTGAATGGAGAATTGCTGAAGTAAATAAGAAATATTTTATGCATGTTAATAAGATAAATAATTGGTTTGTGCTGCTGAGAATGGATTGAGAGCAAATGTGTTCACTTTGATATTTTGTTACTTTTTGTTCTTAGAATGTGGAGCCATTAGTTAATCATCATCCATAACACTGTTCTCTTTTGCACTGAATACGTTATTCAAAGTTCTCAATGGCTGATCGATCAACTAATAGCTCTGCTATTTAATGgttacttttttttttctcaataaagTTGAACAAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2594408 lncRNA upstream 26501 28029705 ~ 28030911 (+) True G2267923
TU2594466 lncRNA upstream 32225 28024967 ~ 28025187 (+) True G2267978
TU2594417 lncRNA upstream 35623 28021060 ~ 28021789 (+) True G2267930
TU2594410 lncRNA upstream 42537 28014126 ~ 28014875 (+) True G2267925
TU2594407 lncRNA upstream 47093 28007028 ~ 28010319 (+) True LOC110504914
TU2594486 lncRNA downstream 2898 28068625 ~ 28070758 (+) True G2267994
TU2594491 lncRNA downstream 7799 28073526 ~ 28078028 (+) True G2267999
TU2594542 lncRNA downstream 61014 28126741 ~ 28127553 (+) True G2268035
TU2594545 lncRNA downstream 69814 28135541 ~ 28135887 (+) True G2268036
TU2594546 lncRNA downstream 70433 28136160 ~ 28136441 (+) True G2268037
XM_036970092.1 mRNA upstream 987 28054388 ~ 28056425 (+) True LOC118946038
XM_036969630.1 mRNA upstream 47090 27987952 ~ 28010322 (+) False LOC110504914
XM_021583784.2 mRNA upstream 95593 27958738 ~ 27961819 (+) True LOC110504912
XM_021583783.2 mRNA upstream 103264 27953112 ~ 27954148 (+) False LOC110504911
XR_005041165.1 mRNA upstream 148982 27902903 ~ 27908430 (+) False LOC110504909
XM_036970093.1 mRNA downstream 89694 28155421 ~ 28163913 (+) True trmt12
XM_021583799.2 mRNA downstream 104734 28170461 ~ 28188340 (+) False sytl4
XM_021583798.2 mRNA downstream 104735 28170462 ~ 28188340 (+) False sytl4
XM_021583800.2 mRNA downstream 104736 28170463 ~ 28188340 (+) True sytl4
XM_021583803.2 mRNA downstream 132946 28198673 ~ 28209723 (+) False LOC110504926
TU2593017 other upstream 1121523 26934720 ~ 26935889 (+) True G2266826
TU2592839 other upstream 1436464 26591266 ~ 26620948 (+) True G2266668
TU2592687 other upstream 1684929 26361992 ~ 26372483 (+) True LOC110504416
TU2592623 other upstream 1765751 26289825 ~ 26291661 (+) False LOC118946064
TU2594875 other downstream 701150 28766877 ~ 28767729 (+) True G2268340
TU2594947 other downstream 831028 28896755 ~ 28898079 (+) True G2268400
TU2597789 other downstream 3111163 31176890 ~ 31181107 (+) True G2271027
TU2599828 other downstream 4797709 32863436 ~ 32863779 (+) False G2272912
TU2600208 other downstream 5350363 33416090 ~ 33421685 (+) True LOC110505056

Expression Profile