Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_021583793.2 |
| length | 1694 |
| RNA type | mRNA |
| GC content | 0.41 |
| exon number | 7 |
| gene id | LOC110504919 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_050571.1 |
| NCBI id | CM025858.1 |
| chromosome length | 44108611 |
| location | 28057412 ~ 28065727 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| species | rainbow trout (Oncorhynchus mykiss) |
| id | name | namespace |
|---|---|---|
| GO:0061418 | regulation of transcription from RNA polymerase II promoter in response to hypoxia | biological_process |
| GO:0035666 | TRIF-dependent toll-like receptor signaling pathway | biological_process |
| GO:0006511 | ubiquitin-dependent protein catabolic process | biological_process |
| GO:0070936 | protein K48-linked ubiquitination | biological_process |
| GO:0034138 | toll-like receptor 3 signaling pathway | biological_process |
| GO:0034142 | toll-like receptor 4 signaling pathway | biological_process |
| GO:0005829 | cytosol | cellular_component |
| GO:0000151 | ubiquitin ligase complex | cellular_component |
| GO:0005654 | nucleoplasm | cellular_component |
| GO:0005515 | protein binding | molecular_function |
| GO:0005524 | ATP binding | molecular_function |
| GO:0004842 | ubiquitin-protein transferase activity | molecular_function |
| id | description |
|---|---|
| K06689 | UBE2D, UBC4, UBC5; ubiquitin-conjugating enzyme E2 D |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU2594408 | lncRNA | upstream | 26501 | 28029705 ~ 28030911 (+) | True | G2267923 |
| TU2594466 | lncRNA | upstream | 32225 | 28024967 ~ 28025187 (+) | True | G2267978 |
| TU2594417 | lncRNA | upstream | 35623 | 28021060 ~ 28021789 (+) | True | G2267930 |
| TU2594410 | lncRNA | upstream | 42537 | 28014126 ~ 28014875 (+) | True | G2267925 |
| TU2594407 | lncRNA | upstream | 47093 | 28007028 ~ 28010319 (+) | True | LOC110504914 |
| TU2594486 | lncRNA | downstream | 2898 | 28068625 ~ 28070758 (+) | True | G2267994 |
| TU2594491 | lncRNA | downstream | 7799 | 28073526 ~ 28078028 (+) | True | G2267999 |
| TU2594542 | lncRNA | downstream | 61014 | 28126741 ~ 28127553 (+) | True | G2268035 |
| TU2594545 | lncRNA | downstream | 69814 | 28135541 ~ 28135887 (+) | True | G2268036 |
| TU2594546 | lncRNA | downstream | 70433 | 28136160 ~ 28136441 (+) | True | G2268037 |
| XM_036970092.1 | mRNA | upstream | 987 | 28054388 ~ 28056425 (+) | True | LOC118946038 |
| XM_036969630.1 | mRNA | upstream | 47090 | 27987952 ~ 28010322 (+) | False | LOC110504914 |
| XM_021583784.2 | mRNA | upstream | 95593 | 27958738 ~ 27961819 (+) | True | LOC110504912 |
| XM_021583783.2 | mRNA | upstream | 103264 | 27953112 ~ 27954148 (+) | False | LOC110504911 |
| XR_005041166.1 | mRNA | upstream | 148982 | 27902903 ~ 27908430 (+) | False | LOC110504909 |
| XM_036970093.1 | mRNA | downstream | 89694 | 28155421 ~ 28163913 (+) | True | trmt12 |
| XM_021583799.2 | mRNA | downstream | 104734 | 28170461 ~ 28188340 (+) | False | sytl4 |
| XM_021583798.2 | mRNA | downstream | 104735 | 28170462 ~ 28188340 (+) | False | sytl4 |
| XM_021583800.2 | mRNA | downstream | 104736 | 28170463 ~ 28188340 (+) | True | sytl4 |
| XM_021583803.2 | mRNA | downstream | 132946 | 28198673 ~ 28209723 (+) | False | LOC110504926 |
| TU2593017 | other | upstream | 1121523 | 26934720 ~ 26935889 (+) | True | G2266826 |
| TU2592839 | other | upstream | 1436464 | 26591266 ~ 26620948 (+) | True | G2266668 |
| TU2592687 | other | upstream | 1684929 | 26361992 ~ 26372483 (+) | True | LOC110504416 |
| TU2592623 | other | upstream | 1765751 | 26289825 ~ 26291661 (+) | False | LOC118946064 |
| TU2594875 | other | downstream | 701150 | 28766877 ~ 28767729 (+) | True | G2268340 |
| TU2594947 | other | downstream | 831028 | 28896755 ~ 28898079 (+) | True | G2268400 |
| TU2597789 | other | downstream | 3111163 | 31176890 ~ 31181107 (+) | True | G2271027 |
| TU2599828 | other | downstream | 4797709 | 32863436 ~ 32863779 (+) | False | G2272912 |
| TU2600208 | other | downstream | 5350363 | 33416090 ~ 33421685 (+) | True | LOC110505056 |
