RNA id: XM_021583799.2


Basic Information

Item Value
RNA id XM_021583799.2
length 3255
RNA type mRNA
GC content 0.50
exon number 17
gene id sytl4
representative False

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 28170461 ~ 28188340 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGAGCAGAGGAAATGCACCTGTTGCGGAAAAATTCTGTACCTCCGCCGCACCACCACTGTCACAACCGTTCCATATCTTCCGGGATTTTAGGTTTCTAACCACCAACGCTGAAAGTCAAGTTACCAGAATGCAGGAAGGAGAGACAGTGAGTTAGACTGGGAAGGAGTCAAGACGATACATTGCAGcaaagggtagagacagagCCTGTCTGGTCTAGGCTGACTATCCCTGAGGAGGTTAGTCTGGGACGGAGGTGCCATGCCACAGGCTGCAGACATGATCAACATGGCCTTCCTGACCGACTCGGAGCGGGAGCTGATCCTGGAGGTGTTGCGGCGGGACGAGGAGCTAAGGCAGGCCGAGGAGCAGCGTGTCCGCAAGCTGAAGACAGAGCTGCTGGACATAAAGAGGAAGGGGGCCAAGCGCAGCAGTGGGAGGTACAGTGAGCGCAGCTGCGGTCGCTGCCAGGAACCACTGGGTCGACTGTCTGCCAGCTCCAGCCAATGTAGGGCATGTAAACACCAAGTGTGCCGCAACTGCCGCGCAGTGCGCCCCAATGGATCCtgggtgtgcagtgtgtgtgccaAAGAGGCTGATCTAAAGAAGTGCACTGGAGACTGGTTTTATGACCAGCGAGTCAACCGCTTCACCACTACCCCTGGACACGACATAGTGAGAGCTTCCCTCAAAAAGAAGTCCCCATTGAGGAAGAGGGAGACCATGGGAGAGCAACTGTTGAAGAGTACAGAGTTGAAACCCGGCCAGCCGACCATCCCTGTTCCCCGACCCAGACTGATGGACCTAGCGGCCTCCAACAATCCGCCAGACAAAGTTTCTGAAGAACCAGTGGCAGCTGAGAAGAAGCAACAGCACCAGCGCAGTGACACTAAATCTGCAGAGAAAGCCAGCTTGAACACTGTCAGGACAGAGACGGAGCCCTCTCTTGGGACTCCTTTCTTACCAATGAAGAAGAAGAGTACAGGTCGGTCCAGTCCAGCAGGTTCCAGTGTGTCCAGTATTCCAGTCAAAGTAGAAAGCACAGGTATCCACAGCGCCAACTTAGACACGTCCTCCGTAGTGAATCGTCGTAGTGTAAGTCCCTGCACCGGGTCTGTCTTATTGGAAGACGACGGGCTGTTCAAGAAGAGCGTCAGACAAGGTCAGAAACCCTCTGAATTCACATCTGTGCTGGACCTGCGTCAGGAAGTATCGGAGGGCTCTATGGGTGACAGAAGCAAGTCTGTGCCTGGCCTCAATGTGCCGgatgACGAGGAGGATGATGAGGACATTGATAACTTGGTGAGCATCCATAGAAAGACAGTGGGCTCAAGTACCTCAAATCTTCGCGGCTCCAAGAGTACACTGGGGAGTCTGATGAGTATTTACAGTGAGGCAGGAGATTATGACTGCGTGGAGGTGAGCGGGGACATTGTGTTCTCTCTCAGCTACGATGACACCACCCATAGCCTGGCCGTCCTCGTCAAGGAGTGCCACTCGCTGGCCCACGGGGACGCCACACGCCAGCGTTCCAACCCGTATGTCAAGTGCTATCTTCTCCCTGACAAGTCTCGCACTGGTAAAAAGAAAACCAGCATCAAACGAAACACAGTAGACCCCACCTACAATGAGTTCCTAAAGTTCTCCATCAGCCGCTCCCAGGTGCTCACTCGTTCCCTCCAGCTCTCTGTCTGGCACCATGACCGCTTGGGCCGTAATGCCTTCCTGGGAGAGGTAGAGGTGCCTCTGGACTGCAGGGACCTCGACGGCCAACACGAGGAGTGTGTGGCGCTCATGGGAAAAGCATCACCACTGCAGTCCTCTGCCTTTTCTCAGTACAAAGGAGAACTGGTGATTTCCCTGAAGTACGTCTCGACTAAGAAACCACCAACAGAGAAGACTAAAGGCAAGACTCTTTCTCTAGGCAACAAGTCAAAgacggaggagggaggggaattGCACGTCTTGATCAAAGAGGCCAAGAACCTGACGGCAATGAAAGCAGGGGACACGTCGGATTCCTTTGTGAAAGGATACTTGTTGCCATTGAAGTCCAAGTCCACTAAGAGGAAGACTCCGGTGGTGAAGAAGACTCTGAACCCTCACTACGACCACACATTTGTGTACAAAGGCCTGACCCTGGACCAGCTGAGTAAGATGTGTCTGGAGCTGACCGTGTGGGACCGGGAGGCCATCTCCAGTAATGACTTCCTGGGTGGGGTTCGACTCAGCACAGGCACAGCCACACTGAAGGTTGGCAAGGAGGAAGTGGAGGCGGACTCAACAGGAGAGGAGGTGTCTCTGTGGCAGAAGATGATGCAATACCCTGACTCATGGGCAGAGGGCTCTCTTCCATTACGCTCCTCTATGGGCAAGAACAAGAGCAAGTGAGGACTCCATCTCATAACCTGAGAGAAGAGCAATTGACAAAGGGCAATCCCTCAACTTTTTATCAGCATTATTATCTGTAACCAAAAGACTATCACAGCTGTGTTTAACCGCAAGCACCAAAAGAAGTGCTTTTGAAAGCATATATAGTAAATTCATCTGAGGTCTTCAGGTATTTGCTAGCCGAGGTATAATTTCATATGTTTGAATGCAAGGTTGTGTGTTTAATATGCAAATGCTTTTTAAAATCATAAACAGCACTAACCAAAGAGTTGATCAAATTCAACAACTCATGTTTAATTGACATTTTTTTCCACATATTTCTTCAAGCTAAATTCCATCCATGATCAGCAAACCATTCATTATTAACTAGGGTGCTTCATGGGGGGTTGCCGGGTTTTCAGTTTCAGGCTGAATCTCTGTTGCACTCGAAGGCACTGAAAAATGGTGTCCATTTTTGGTCCATATCAAATCTTGTGTGGTGCTTCATGGCAATCAAATGAAAACTACTGTACCTGTGATAGGGATGTCAAGCATGTGGTACATTgaaatatatatgtaaatatgatcagttgCACTAAAAGTGACCAATTTTATTTCTCAACCTCTATCCTCTTAAAAGTAAATGTCATTATCTTTCATACTGTAACTTGAGTCAAGTTTGCTTTTATTATGgctcacaggaggttggtggcaccttaattggggaggacaggatTGTGGTAATGAAATaagtggaatggcatcaaacgcatggtttgatgccgttccagacgttattatgagccgtcctcccctcagcagcctccactgctatgGCTGTATCAAATTGTATTAATTCACCTAATAAATATGTGAAATGCCTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2594569 lncRNA upstream 396 28169738 ~ 28170065 (+) True G2268060
TU2594568 lncRNA upstream 949 28169008 ~ 28169512 (+) True G2268059
TU2594567 lncRNA upstream 1860 28168234 ~ 28168601 (+) True G2268058
TU2594547 lncRNA upstream 33737 28136520 ~ 28136724 (+) True G2268038
TU2594546 lncRNA upstream 34020 28136160 ~ 28136441 (+) True G2268037
TU2594588 lncRNA downstream 25294 28213634 ~ 28214329 (+) True G2268078
TU2594598 lncRNA downstream 31303 28219643 ~ 28219948 (+) True G2268088
TU2594613 lncRNA downstream 92831 28281171 ~ 28285957 (+) True G2268103
TU2594593 lncRNA downstream 107833 28296173 ~ 28299867 (+) True G2268083
TU2594644 lncRNA downstream 162857 28351197 ~ 28351400 (+) True G2268132
XM_036970093.1 mRNA upstream 6548 28155421 ~ 28163913 (+) True trmt12
XM_021583792.2 mRNA upstream 104734 28057412 ~ 28065727 (+) False LOC110504919
XM_021583793.2 mRNA upstream 104734 28057412 ~ 28065727 (+) True LOC110504919
XM_036970092.1 mRNA upstream 114036 28054388 ~ 28056425 (+) True LOC118946038
XM_036969630.1 mRNA upstream 160139 27987952 ~ 28010322 (+) False LOC110504914
XM_021583803.2 mRNA downstream 10333 28198673 ~ 28209723 (+) False LOC110504926
XM_021583804.2 mRNA downstream 10333 28198673 ~ 28209723 (+) True LOC110504926
XM_036970185.1 mRNA downstream 37097 28225437 ~ 28244563 (+) True LOC110504927
XM_036970187.1 mRNA downstream 68106 28256446 ~ 28296161 (+) False LOC110504299
XM_036970188.1 mRNA downstream 68106 28256446 ~ 28296161 (+) False LOC110504299
TU2593017 other upstream 1234572 26934720 ~ 26935889 (+) True G2266826
TU2592839 other upstream 1549513 26591266 ~ 26620948 (+) True G2266668
TU2592687 other upstream 1797978 26361992 ~ 26372483 (+) True LOC110504416
TU2592623 other upstream 1878800 26289825 ~ 26291661 (+) False LOC118946064
TU2594875 other downstream 578537 28766877 ~ 28767729 (+) True G2268340
TU2594947 other downstream 708415 28896755 ~ 28898079 (+) True G2268400
TU2597789 other downstream 2988550 31176890 ~ 31181107 (+) True G2271027
TU2599828 other downstream 4675096 32863436 ~ 32863779 (+) False G2272912
TU2600208 other downstream 5227750 33416090 ~ 33421685 (+) True LOC110505056

Expression Profile