RNA id: XM_036970187.1


Basic Information

Item Value
RNA id XM_036970187.1
length 7903
RNA type mRNA
GC content 0.42
exon number 6
gene id LOC110504299
representative False

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 28256446 ~ 28307408 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCACTTTCACTTCTGTTTCAGGTTCCCACTTTCACTTCTGTTTTGACTGTATCCCCCAATATCCAGTAAGTGCATGGTTTGAAGGAGGCTTATTCAGAGAAACTACTTTCAGACAAACTTAATGTATCTTTGAATCCAGGCCAGGATCAAGGAGTTGTAATGGCGGGACAAGGATTTCAAGGTGCACTGAGGGTCATGCTCCTTGTGTGTCTCCTTGGACTAACAAAAGAGTTTGAACTTGAGGACAAAGACTGGGACGAGTTGAGGTCTGATGTGGCTGCGCTGCACAGATTGAAAGGATTACCTGATCAAATGACACGTAGGACCACAGGAGCAGACACCAGAGAGATAACAATGCACGGGACCAGGACAAAGAGATTCAGCAATTACAGGGCATATGTGGAGAAAAGGCCCATGGCTTTATTTGATGGTCTTAGGGGATGTGACAATTTTACAACATGTGTCATTCAAATGGACCAGGATCTTGAAAGGTTTCTGGAAGAAATTGATGGACAAAAGATCCAAGATTTGCTGCTGTCTGCTTCTGAAATGTCTTACACCTACAGCAACAAACTTCTCCTTATAATGGACAAGGAAGAGTGGACTCGTCAGCGAGTAGAAGAGGAGTACAGCATAGATCCTCATTATTCAGTAATGGTCAGTGATGCTTGTGTATACAATGATTCATGTCTCCCAACCATTAACAGTGGCACAGTGGTGAAGATATTTGGTACTGCCTCAGAGGATGGACATACTCTGTCCGGTTACTCTGGTTCTTCACTAGCAAATCTAATGTTGAAACGATCATTGAGGGCAGCATCCGTTTTCTCCCTTGACATCAATACCACTTCTTCATTTCATAATGACTTCATGAGGGTTTTTAAGTATCATGACAATAATGCTGTCTTGGAAACTACCAGCCCGGGAGAtcttctcatctttcaaatcatGGATCACACTGACACTGCAGCTGAGTACCATGCTCCAAAGAGACCCATTGATCACACCACACAGTATGATAAACAGCACATCCTAATACTGGAAGATAACCCCGTTGTTCGGGAAGCTGCTAAATTTCTATATGAGAAACATCCCACTGTGACCTCTGTGTACATCCTGGAAAACCAACAGCCTAAACTGATCAAAGGCGACCCGGTGCCACTGTCAGAAGAGAGCAGACTGGTCCTTGTAGGCCATGGGAGCAGAGACAGCGAAGGAGAGATGAGGTTTGGAGGGTACAAAGCCGAAGACGTGGCTGACATCATTGGACGTACTGCCAGGACTAGTGACCATATTAAAACCACAAGTGTGGTGGCCTGTGAAGTTGGGTCTGATGAAGCCTTCAAGAACACCCTGTTAAAAGAGCTCCACACCAGGTCTATTGAGACAGAGCTACACCTAAGGAGTTCTTTGCTCCAAGTCAGCCACTCTGGGGAGAAGATAACTGTAGAAATAACCCCCACTGGATTGGAAACAAGACATAAGGATGACAGCAAGAAAGTGGTGGCAATGTTAGACAGAGATGGAAATGTCGTCACTAGAGAACAGTTCAGCAACAGGGGGGAAGGGATTTTTTCAAATGAGAGAAACTTTCTAGGGGAAACTTCTGTTCAAGAACGTTTTAAAAAATACAGAGACACATGGCCAGACAATCCAAAGAGATTTGTTGAATCTTATGCACGTAGAAAATATACTGATGAACTTGAAGCCTTAACCTGGGCAATTTTTCAACCAATGAAAAGTGATGAAAATTCAAAAAAGTTACAGACAAATTTGGACAATGAAGAGTTTCTGATATGCAATATTGAGAGGCAAATGATAAACGGAAGAAATACAATAAAGGAGAAAACATGGATTGAAGATAACAATGTCATTAAAGGTATTCTTGATAACTGCTATGAAATGAAGTCAGGTGAGGATATTCTAAGTGTGATCCATCACAATGCAAAGCTTGGAGAAGATAAGACCACCTACCTGATGTTACATGACTGGATTTATGAGATAAACCCCCAAACTTTATATGTGTTTCCAGTGGGGAAAAAGCTCGACAACAATGAAAAGGGAAATCAAAACAGAATAGATGAGATAAAACGTTGTGTTGAGGAACAGATTGGCAAAGAACATTATCCAGCCATCCGTAAAAATATAGGCAAAGATGGCAAAGAAAGTTATCCTAATTTTGTGAAAGAAACTCTTCAAGGGGAATACATTAATAAAGGCTCACAAGGTATGATGAAGGAGGCATGGTACAGAACATATTTCTTGGCATCAATAATATCAGAGTCCTCCAGAAACTTCCGTACATTTCCTCTTGTCCTGATGGCCTTAGATATGGCCCACAGCACAGACAATAATGTGAAAGAGAAAGGTTTGAGTTTCCTCATGGAGAATCATCCAATGACAGCAGGTGGTACTTGGGTGGATCCAAGTAGGCGAGGATTTTTTGGTTCGTCCTCAGACAGAGATTCTAgcaaattagaaaacaaatcagaAAAAACACGTAAGACCCCAAAGGAATTAATAAAGAATCTTTTGGACCTTACAGAAAAAGAGAATAATGTGTTTGAAGAATGGTGTAAATTGAAAAAAATGGATAACAACAAGGTAGCAGATGAGATCTACAAACTTGCAAATGAGTATGCGCTAGTGAATGAGATTTCAAAAAGTTCATTCATAGAGGATTATAATTATTTCTTAAAGGAAATTGGCAAACAATCAACCCAAAATGAGGTCACTGGACTTTTGGGTGGGTCCCATGATGGCTCCGTGACATTGAAAGATCTACATTCCGCTTCAGAAGTAGAGCATTCACTCAAGCTCTCTTCATATTACGCCAGGTCCTCTGCTATGTTTGCTGAACAGATTCACAATCAGTTGAGGAGAGAATTTGGTGACAGGCTGGACTCGGAGGAACTACATGTCAAAGAAGGCAGTATTAGGCTGGAGGATGGACAATTTCGATGCCAGCTCACATCGAAGAAGAATCTCCGGGAAACAATTGAATTTAAGGTGGAGTTGCATCCAGAGGGACAACTATACACagagaaaatgtggaaaaacatgGAGACAGTTCATGGCCTGGAGATTCCAGATGGGACCCATTCTCACCAGGTCTTGAAGCACCTAGAGCACACAGGGATGGCAATTGGAGCAGTGGGACTCATGTTGGGGATGCAAGGAGCTGTTCATGCTTTTGAAGAGGGGGACATTGAACATGGTACAATAGCCACGTTACAGACTGTACATGGAGTCACAGGAATGACCTTGGCTGCAGTTGGAAAACAAGTTCCTCAGGTTTTAGAGCGCAAGGCAATGAGAGCCATGGTAACATTAATCAAAAGCCCTGTGGTGAAACGTGCCCTGGTGGTTATGCCAATCATAGGGATTGGTTTTGGAATTTACAATATTGTGGAAGACTTTAAGAGGAAAGATGCACTGGGGTATATTGATGCCACCTTCGATGCTGCAATAGTTGCCTTGGATTTTCTTGAAATCGTTCAACCAGAACTGGCGCCATTTATTGTGCCAATCAACCTGGCACTAAATACCATACGAATGATCTTTGATGATGTATATCTTGATATTCAGACTGAACTCATTCATTTACCACCAAATGCTGGAGTTTTGGCAAAAATAAGAGCATTCTTTGTTGGCTTTGGGAAAGGACTTTTACACGTTATCCTTGATGTGGCAAGCTTTTTTTATACCATTCCTTATCGTGAGATTGAGGAGGGACGAAGGCTTGTTCAACAAATTTCAGACCACCAAAAGTACTATTATTTTGCAGAGGTACAGGATGGGAGAAAGGCCATTGATTTCACAGCTGGTGAGGATTCTTGGAATGGAGGGAGTATCACTTTTTGTCTCTCAGACCAGGGACCATCTGACTTCTGCATGGATTATTTTGTATCCAGTGACGAAAACTTGGGGAAAAGGTGTTGGACTATTGACACACAAAGAACTAAAGATATTGTTCTAGGCATTGGAGAATCACATAGATTAACTTACAAAAACATAGATATAAAAATACTCCTATTCATAAAAGTTGGCTCTAGGTCTGTCGTTTCTGGTTATGAGGCTTTGTCAGACACAAGATTTGGAACATATTGGGGAAACAATGAAGCAAATAATTTTTTTGCCGTTCAGAAGGCAGATGACGACCATGGCATTGAAGTCATGTTGAGCTATTACTACAAGCTTTATGGAAAAAATGGTGATGACGTGTTCTATTTGGGACCTCAAAAAAGCTATGTGGAGGGGTGTGGCGGCAAAGACACTTTCATCATTCCTGTCTATGGAGGAAACACAATTATTAATAACTATGATCCTTTCAAATCAACAGATGTCCTACTCCTCGGCGTTAACTACAGTCAGATTTCTGTCAGTAAGTCAGGAAATGATATGGTTTTAAGATATCTTGGTAACCATAACATTAGGATTATGAACTGGTTTTTGGGGGACGAATATCGGCACATGAACATGATGTCAGAGGACGGAGTCCTGTTCGACATCTCCACCACAGTGATTTCCTCTGTCCAACTGATTGCCAGAGGTATCAATAGAATGTCTAAAACTCACGGCCAGACAGTGAACGCTTCCGAACCACTTCTCCTTAGCGTTACTAATATCATGGGGTCTCCTTACAATGACATACTAATAGGAAATAGACAGAAGAATCTGATTGATGGTGGAGGGGGTCAGGACCAcctgaggggaggagaaggagaggacataTATATGGTTTATGAGAAAAAACTGTCAAAGATATTAATTGAAAATCACTCCTATGACAATGAAACAGACCTACTGGTGATAGAGGCAAACCTTCATGAATTCAAAGTTAAAGTGGATGGAAACCATCTCAAAATGATGCCTTTTGCTGATCAAAGTTCTGATGTGACCTTAATGAACTGGTTCCGTTCAGATGCGGACAGGCACTTGCTTGTTATCACAAAGGATCTGGTCACCTTCAGCATCTCTGAGAACAAGGCAGCCTGTGAGCAGATTGACTCATTTAAGAGCAAATGCCTCATAAGTCAGAATCTAGATTACAGAAAGTCCACAGCTGCTCTACATGTGGATCTGCAGGAGGATGAGGCTTTCCAAAGTGTAACAGAGGTGCGAGGCTCAGCCTTCAATGACATCATCAAAGGGAACGTACAACGCAACACAATTGTGCCAGGGCGAGGAACAGACTTTCTTCAGGGGCGAGGAGGGGAGGACTGGTATGTTGTAACTCCAGGTCAAGGCTTGAAAACCATTGAGAACCACTCACCCGATCTGGCTACTGATGTACTTTTCCTGAGAGAAAAATATGATTTAATCAATTGTAAATGTAATGGACCAGACATTTATCTCTCCATAAATGGCTCACAGGAAGTCCTATTGAAGGGCTGGTTTCACTCAAGGAACTCTCAACACCTCCACATCCAATCAGCTGATGGAATAACATTTCAACTGGAGTCCAATGCCAGCAGTTGCGATGGCTCCTTAAAGCTGCCTCAGTCTGTGGATTTCCGAAATAGGGTGACTGGAGAAATCATGAAGATGAATAACAGCGACTTTGCCTCAGTGGTGGAAATGTATGGCTCATCTGGTTTCGACAGCATGGAAGGAAATGACAAAAATAACATGCTGGATCCTTTTACTGGAGGTGGTAGCATggtgggaggagatggggaggataCCTACGTAGTGAACACTGGATATGGAACCAACATCATGATTGAAAACTTTGCAGAGGATGAAAGAATGGATACTGTGTTGTTTGAGATGGATTTCCTTGGTGGTGGTCAACTCACTGTTCAGTCTGACAAGCATGATGTACTTGTGAGCACAGGTACACAGGGGCATAAAATTCAGGTCCGAGTGCTCAACTATAATTCAGGGCAACAACACCAACACCTTAGCTTCCAGAGCTCTGATGGAGTGCATTTTTGGGTTAGATCTCCAGTTGGAAACAAAACGCGTAGCTTTCAAAAGCCTTGGATTGAAGCTTACAAAGTGACAATGAAAGGAAAACTGGGAGACTGCCAAATAGATCTGAGTTCTCAATCAAATTTATCATTGGTTCACACTGTGCAGGGCTGTCCCCATGACTCCAATTACATTACAGGTAATGAGCAGGAGAACGTACTCTTCGGTGGCATCAAGGATGATGCACTGGATGGAGGGGCCGGCCATGACACCTTGCTGGGGGGTCAGGGCAATGACATCCTGATTGGGAACATAGGAGATGACACTCTTTATGGAGAGGAAGGGAGTGACACCATGATGGGCGGCTCAGGCTCTGACACCTTTGTTCCCGGACCAGGGGCTGATCTAGTGGACGGGGGCCCAGGGAGAGACACTGTGCTGTACCAGGGGGATCATGAGAGGGGTGAGGGCGTTTACGTCAACCTGCTGAGCGGAGAATGCCGTCAGGCAGATGCCGAGGGAGATGTGTTGAAGGATGTTGAGAATGTGATTGGCACTATCTACTCAGATATCTTGGTGTCTGGCTACGAACCTGCCCTACTAAAAGGCTCTGACGGCAACGACATTCTAGTGTCCCTTGTGGGAGGAGATTACTTGATTGGAGGAGAAGGAAGTGACATTTACATGATGGTTTCCCACCATGGCTCAGTGATCATAGACAACTGTGCTACAGATAATGCCACGGACATTGTGTACCTGCGCTCTCTGTCTGAGAAGTCTGTTGACTGTTCATATCTACTTGACGGAGTGTTTCTGACATTTTATGGACTCGGCGACACTACTGTTGACATAGAGCTGCGAAACTGGGTCAACTTCAGTCATGAGTGTGGCCATCTTATGCTGGTCCTCAATGAGGGTGAAATATCTGTAGATGAACTCATGCAGGAGTGTGAGTTGAGATATAACATGCAAAGAGTCGTGGCAACTGTTACATTAATCCTTCTACTTGCCGTTTTACATGGCATTATTTTGGTAATACCTGTAATCcatagaaagaggaagaggggacaAGGAGGGAAAGACAGCAGTGATAGAGCTACTGAAATGGGGAAAGACACAATAGAAGTGCGAGAAGAGGACGCACCTCTCCAGGGCTTAACTTCTCAACCTaaagtagaggaagaagaggaagagaaggaaactGAATGAGAACGATAGACATTCAGTAACTCAGGACAGGACCTCAGAGGATGTAAAGGAGACAAGTGAGTGATCTACACCCTCATAATAAGTTTGGAGGACGAAAACAAGGGGAGCAAAAGATATAACCACATGGCATAAAGTACTAACCAACTCCCTCCACTTAATATCAAGCAAATGTAACCTGACCAATGGTTTTATGTTAATCTCTTACTAAACACAGCTATGAATACCTAACTACAGTATCAGAACGAATCACTGTTCATAAATAATCACTTCTTGTTATTATATCCTTATATTATACAAAAATAGCTACTCTGTCTGGAAGTTTAAAAATGTACAAATATCATGTTTAAATCAATGAAATGTTAATAAAATGCAAAGCTCAAtctttttttaaacttatttctACCCTATTATACATCTATGCTTGAATTGACCAGTTTCCTTTCAGCTTGGATGTGGCATGTGTTGAACTGAACAGCAGATGACAGTATTGGAAAGCCTAGCACTAGTAGTTTGTAAAAAGATATCTCACACAGAGCCTTTAGTTAATAGAACCTAATCATTCGAGGCATCCAGTTGTCGCCAAGGTAACTTTTCAAGTCAGTCCACCACACTACAGCATGTCATTAATTATTTaggaaaatgtatataaaactTGTATAAAATGCATTTTTAATTATATGACAATATTTTATGTTTTATCTCCAATAGAGGTCACCCGATTAATcgggaatggccgattaattatggccggtttcaagttttcataacaatgggtaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2594598 lncRNA upstream 36498 28219643 ~ 28219948 (+) True G2268088
TU2594588 lncRNA upstream 42117 28213634 ~ 28214329 (+) True G2268078
TU2594569 lncRNA upstream 86381 28169738 ~ 28170065 (+) True G2268060
TU2594568 lncRNA upstream 86934 28169008 ~ 28169512 (+) True G2268059
TU2594567 lncRNA upstream 87845 28168234 ~ 28168601 (+) True G2268058
TU2594593 lncRNA downstream 12 28296173 ~ 28299867 (+) True G2268083
TU2594644 lncRNA downstream 55036 28351197 ~ 28351400 (+) True G2268132
TU2594645 lncRNA downstream 55657 28351818 ~ 28352214 (+) False G2268133
TU2594646 lncRNA downstream 55657 28351818 ~ 28352373 (+) True G2268133
TU2594662 lncRNA downstream 92831 28388992 ~ 28389324 (+) True G2268147
XM_036970185.1 mRNA upstream 11883 28225437 ~ 28244563 (+) True LOC110504927
XM_021583803.2 mRNA upstream 46723 28198673 ~ 28209723 (+) False LOC110504926
XM_021583804.2 mRNA upstream 46723 28198673 ~ 28209723 (+) True LOC110504926
XM_021583799.2 mRNA upstream 68106 28170461 ~ 28188340 (+) False sytl4
NM_001165231.2 mRNA downstream 6243 28302404 ~ 28304890 (+) True m1ip1
trnav-uac-98 mRNA downstream 57456 28353617 ~ 28353689 (+) True trnav-uac-98
XM_021583808.2 mRNA downstream 62531 28358692 ~ 28370507 (+) False LOC110504931
XM_021583810.2 mRNA downstream 62531 28358692 ~ 28370507 (+) False LOC110504931
XM_036969776.1 mRNA downstream 62531 28358692 ~ 28370507 (+) False LOC110504931
TU2593017 other upstream 1320557 26934720 ~ 26935889 (+) True G2266826
TU2592839 other upstream 1635498 26591266 ~ 26620948 (+) True G2266668
TU2592687 other upstream 1883963 26361992 ~ 26372483 (+) True LOC110504416
TU2592623 other upstream 1964785 26289825 ~ 26291661 (+) False LOC118946064
TU2594875 other downstream 470716 28766877 ~ 28767729 (+) True G2268340
TU2594947 other downstream 600594 28896755 ~ 28898079 (+) True G2268400
TU2597789 other downstream 2880729 31176890 ~ 31181107 (+) True G2271027
TU2599828 other downstream 4567275 32863436 ~ 32863779 (+) False G2272912
TU2600208 other downstream 5119929 33416090 ~ 33421685 (+) True LOC110505056

Expression Profile