RNA id: XM_021583810.2


Basic Information

Item Value
RNA id XM_021583810.2
length 2036
RNA type mRNA
GC content 0.58
exon number 14
gene id LOC110504931
representative False

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 28358692 ~ 28370507 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACTCATAAACCGGATGGTGTTACACTTTAAAGTGTAGAATTTCCTTTTGCTACACCGTTATCATTCCCGAAAATGGCGACTTTAgcagctgctgctgttgttgctgccGCTGGCAGAGATCCCGCTGTTGACCGTTCATTGCGCTCTGTCTTTGTGGGAAACATTCCATATGAGGCCACAGAGGAGCAACTGAAAGACATTTTTTCAGAAGTCGGTCTCGTTGTCAGCTTTCGGTTGGTGTATGATAGGGAGACAGGCAAGCCGAAGGGATATGGCTTCTGTGAGTATCAGGACCAGGAGACAGCCCTCAGTGCCATGCGGAACCTGAACGGAAGAGAGTTCAGCGGCCGGGCTCTCCGTGTCGACAATGCTGCTAGTGAGAAAAACAAAGAGGAGCTCAAGAGTTTGGGGACAGGAGCCCCCATTATTGAGTCTCCCTACGGGGACAACATCATGCCAGACGAGGCTCCAGAGTCTATTAGCAGAGCTGTGGCCAGTTTGCCCCCAGAGCAGATGTTTGAGCTCATGAAACAGATGAAGCTGTGTGTGCAAAACAGTCCCCAGGAGGCCAGGAACATGCTGTTGCAGAACCCCCAGCTGGCCTTTGCTTTGCTGCAGGCCCAGGTTGTCATGAGGATCGTAGACCCTGAGATTGCCCTGAAAATGCTTCACCGTCAAACCCCAGTGCAGCCATTGGTTCCCAACAGTCAAGCTGGGCCAGTGCCAGTGGCCAACCAGCCTATTCCCCCAGCCAATGCTCCAGTCTCCCAGTCACAGCCCATGCCGGGCATGCACATGAACGGAGCTCCTCAGATGATGCAGCCCCCTCCTATGGGTGGGGGACCTGGGCCCATGCCAGGACAGGGACCAGTGGGACCACCAGGAAACCTCCAGCACTCACCCGTAGGATCATCTGGGCAGGCTGCTATCGAGCGACCTCAAGGACCAGGTGGTATCCCTCCCAGAGGCCTGCTTGGTGATGGCCCCAATGACCCCAGAGGAGGAACCCTGCTCTCTGTTACAGGAGAGGTCATCGAACCCAGTCGAGGAGGAGGCTTCATCGGGGCCCCCCCACCACACCAGGGGCCCCCCATGCACATGAACCAGATGGTTGGAGGGCCTCCTCTGGACATGAGGCCGCCCCATGACATGAGAGGACCCCCCATGGGTGAACCCAGAGGCATGATGGGAGAGCCCCGGGGACCCCCCATGGGTGAACCcagagggatgatgggagagCCCCGGGGACCCCCCATGGGTGAACCcagagggatgatgggagagCCCCGGGGACCCCCCATGGGTGAACCCAGGGGCATGATGGGAGAGCCCCGGGGACCCCCCATGGGTGAATCCAGGGGCATGATGGGAGAGCCCCGGGGACCCCCCATGGGTGAATCCAGGGGCATGATGGGAGAGCCCCGGGGACCCCCCATGGGTGAACCCAGGGGCATGATGGGAGAGCCCCGGGGACCCCCCATGATGGAACAGCGGGGACCCCCCATGATGGAGCCCAGGGGACCCCCCATGGAGAACAGAGGTCGGGACCCCCGAGCGGTGGACCCCCGTGGACCAGTGTCGGGCCAGAGGGTTCCCACTGCACAAGGAATGCAGGGCCCCTCCCCTCACTCCATGAATACTAATGCCCCTCCACCTGCCAGACCGGGTCCTGGTGTACCACAGTCCGGAGGTAGCTTCAGCCCAGGGCAAAGCCAGGTGACCTCACAGGACCATGAGAAGGCCGCCTTGATCATGCAAGTGCTGCAGCTGACCCCAGAACAGATCGCCATGCTGCCCCCAGAACAGAGGCAGAGCATTCTTGTCCTCAAAGAGCAGATCCTGAAGACCACCGGGGCACCCTGAATACCCCCACACCCATAGGCTCAAGGGGAACACTTCATAGTCAGTTCAACTGAGAGAAGCGTTGCTGGATGTTACGTGATGCCCAACCCTTTTCATTTTGTGGCTGGAACCTGTTGCCTGTCTGGATATTTGTTCAATTAAATAAACATTTCAATAGAAACTGTTCacaatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2594646 lncRNA upstream 6319 28351818 ~ 28352373 (+) True G2268133
TU2594645 lncRNA upstream 6478 28351818 ~ 28352214 (+) False G2268133
TU2594644 lncRNA upstream 7292 28351197 ~ 28351400 (+) True G2268132
TU2594593 lncRNA upstream 58825 28296173 ~ 28299867 (+) True G2268083
TU2594613 lncRNA upstream 72735 28281171 ~ 28285957 (+) True G2268103
TU2594662 lncRNA downstream 18485 28388992 ~ 28389324 (+) True G2268147
TU2594669 lncRNA downstream 23891 28394398 ~ 28394676 (+) True G2268151
TU2594670 lncRNA downstream 24248 28394755 ~ 28394961 (+) True G2268152
TU2594671 lncRNA downstream 25461 28395968 ~ 28396232 (+) True G2268153
TU2594678 lncRNA downstream 31898 28402405 ~ 28402690 (+) True G2268160
trnav-uac-98 mRNA upstream 5003 28353617 ~ 28353689 (+) True trnav-uac-98
XM_036970190.1 mRNA upstream 51284 28256447 ~ 28307408 (+) True LOC110504299
NM_001165231.2 mRNA upstream 53802 28302404 ~ 28304890 (+) True m1ip1
XM_036970188.1 mRNA upstream 62531 28256446 ~ 28296161 (+) False LOC110504299
XR_005041208.1 mRNA downstream 31742 28402249 ~ 28404199 (+) True LOC110504300
XM_021583814.2 mRNA downstream 36511 28407018 ~ 28409839 (+) True LOC110504934
XM_021583815.2 mRNA downstream 39804 28410311 ~ 28425659 (+) False LOC110504935
XM_021583816.2 mRNA downstream 39804 28410311 ~ 28425659 (+) False LOC110504935
XM_036970238.1 mRNA downstream 39804 28410311 ~ 28425659 (+) True LOC110504935
TU2593017 other upstream 1422803 26934720 ~ 26935889 (+) True G2266826
TU2592839 other upstream 1737744 26591266 ~ 26620948 (+) True G2266668
TU2592687 other upstream 1986209 26361992 ~ 26372483 (+) True LOC110504416
TU2592623 other upstream 2067031 26289825 ~ 26291661 (+) False LOC118946064
TU2594875 other downstream 396370 28766877 ~ 28767729 (+) True G2268340
TU2594947 other downstream 526248 28896755 ~ 28898079 (+) True G2268400
TU2597789 other downstream 2806383 31176890 ~ 31181107 (+) True G2271027
TU2599828 other downstream 4492929 32863436 ~ 32863779 (+) False G2272912
TU2600208 other downstream 5045583 33416090 ~ 33421685 (+) True LOC110505056

Expression Profile