RNA id: XM_021583838.2


Basic Information

Item Value
RNA id XM_021583838.2
length 2959
RNA type mRNA
GC content 0.47
exon number 18
gene id LOC110504943
representative False

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 28928741 ~ 28947689 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTTTGCGGACAGCCATTACATCATAGAAGAAGTAGCGTTGGACGCTAGCTAATTATCTAAGCTCAACTGGCTGAcaagctggctagctaacgttattttTCCTCGCAGAAACAAAAACGGAACTAGCTACATACCAAGTGAATTGAAATTAGAAACAAAACCGGGACAATGAAGACGCGGATAGACACTGAATTTGTACTTGTGTTCACGTTAGTTGCCTTTAGTACTTGTTCAGGATTCTACCTTCCGGGTTTAGCCCCAGTGAGTTTTTGTGAAGATAAAGGAGGCGATGATTGTCAGaCTCTCATCCAGCTGTTTGTGAATCGCTTGGACTCAGTGGAATCAGTTCTGCCCTATGAATATGACGTCTTTGACTTCTGCAAAGATGACAACGAGAGGAGACCGTCTGAGAACCTGGGCCAGGTGCTATTTGGTGAGAGAATTGAGACGTCGCCATACAAGTTCTCATTCAAAAAAGACGAGAAATGCAAGAAATTGTGCACCAAAACCTATGTGAAGGATAAAACTGAGGATAAGAACATGCTGGACTTCCTCAAGAGAGGAATGCAGTTGAACTACCAGCACCATTGGATTGTTGACAACATGCCAGTCACCTGGTGCTATGATGTGGAAGACAGTCAGAAATACTGCAATCCTGGATTCCCCATTGGCTGCCTCGTCACCACCGAAGGGCGCGCTAAAGATGCCTGTGTCATCAATTCCGAGTTCAACAAGAAGAACACATTTTACATCTTCAACCACGTGGACATCAAATTGACCTACCACAATGGggaaggggaggggtggagaggagctCGCCTGGTGGCTGCCACACTGGAGCCCAAGAGTATCAACAATGCTGACGCTGACAAACCTACATGTGAAGGCCCTCCCATGGAAGTTCCTGGAGAGTTTAGCAGTGATGTGAAAATCACCTACACCTACTCTGTCAGCTTCGAGGAAAACAATGACATCAAGTGGGCCTCTAGATGGGACTACATTTTGGTCTCCATGCCTCACACCAACATCCAGTGGTTCAGCATCATGAACTCTCTGGTCATCGTGCTCTTCCTGTCTGGCATGGTGGCTATGATAATGCTGAGGACCCTGCACAAGGACATCGCCAGGTACAACCAGGTGGACCAGGAAGAGTTGATAAAGGCTCCACCACCACAAGGAAAATCCATATTCTATGAGGATGCCCAGGAGGAGTCTGGGTGGAAGCAGGTGCACGGGGATGTGTTTAGGCCTCCCAGGAAGGGCATGCTGCTTTCTGTGTTCCTCGGCCAGGGAACCCAAATCTTCATCATGACCTTCATCACCCTCTTCCTGGCCTGCCTGGGGTTCCTGTCTCCAGCTAACCGAGGGGCTCTGATGACCTGTTCTGTGGTGCTGTGGGTTCTGCTGGGCACCCCTGCAGGATACGTGTCAGCACGCCTCTACAAGACTTTCGGTGGTGAGAAATGGAAGACCAATGTCCTGTTGACAGCACTGTTGTGTCCAGGGATTGTGTTTGCAGACTTCTTCCTGATGAACCTGATCCTGTGGGTGGAAGGCTCGTCAGCTGCCATCCCCTTCGGCACGCTGGTGGCCATCTTAGCTCTGTGGTTTGGTATCTCCGTGCCCCTCACCTTCATCGGTGCTTACTTCGGCTTCAAGAGACCCGCCATTGAGCAGCCGGTGAGAACCAACCAGATCCCCAGACAAATCCCAGAACAGTCGTTCTTCACCAAGCCTGTCCCCGGCATCGTCATGGGGGGCATCCTGCCCTTCGGCTGCATTTTCATCCAGCTCTTCTTCATCCTCAATAGCATCTGGTCTCACCAGATGTACTACATGTTTGGTTTCCTCTTCCTGgtcttcatcatcctcctcatcacCTGCTCTGAGGCTACCATCCTGCTATGCTACTTCCACTTGTGTGCGGAGGACTACCACTGGTGGTGGCGTTCGTTCCTGACCAGCGGTTTCACGGCCGTCTACCTGTTCGTCTACGCCGTCCACTACTTCTTCTCCAAGCTGCAGATCGTAGGAGCCGCCAGCACCATCCTCTACTTCGGCTACACCTCCATCATGGTGCTCATCTTCTTCCTCTTCACAGGCACAATTGGATTCTTTGCCTGCTTCTGGTTTGTAAATAAAATCTACAGTGTGGTGAAGGTGGACTAACGGAATGAGGGCCGGACTCCCTGCTCTCCCAGTGCAGCGCTTTTACAGTGACCGCTTTGAGGAAAGGAAGCCCTTTGAATGACTTGAAAACATCACGTCTCAGATCTAGAGGTGAAGCCCTCAAACTTGATATGTTGCGGTCGTAATTATTTTGGCTTTTACCATCTAAGATTAATTGACATTTTGATTTGAGTTGCACCTTGATCTACGAGGTGAGTTCCAAAGATCTAAGTTAGCGGGtgcctggttaggggagggtggtGAAGGATGTTCCAAAATGATGTTTTTCCCCATTtctaatgtaaaaaaacaaacaaaagtacTTTATTTTGCTTTTATATTCTCAGAAACCTAAacttatatttttatttttcaccaaCTCTGCTGTATTCAGAAGATGTGTTGATACTTAAAGAATGTCACCTCTATGGATCTGTCCTTTACaacatttctgttttgttttgtttttatatttGTTTGGTGAGGTGAGGACGGGCTGTAGCATCCTAACCATTTAATGACCTGTACTATCGTTTTACAGTAATGGAATCTGTATAAATATCTGCAACTGACTCTGCCATGAAgaaatctgtttttatttttctggCTATATTTTGGTTGAtatgaaaataagaatatgtagtTAGAAACACATCTTTATCGTAAATGGATTTGCTATAACAGTAGAAATGTAAGCCAAAGCTTATgactcatgtttttttttgtttggatTGTAATATCTCACACAGCACAGGAGAATACAACTTGGTGGATGATGACGATACAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2594966 lncRNA upstream 4180 28923646 ~ 28924561 (+) True G2268419
TU2594935 lncRNA upstream 53581 28874878 ~ 28875160 (+) True G2268392
TU2594927 lncRNA upstream 62328 28866152 ~ 28866413 (+) True G2268384
TU2594925 lncRNA upstream 65345 28863080 ~ 28863396 (+) True G2268382
TU2594923 lncRNA upstream 67262 28861267 ~ 28861479 (+) True G2268380
TU2594982 lncRNA downstream 13881 28961570 ~ 28961960 (+) True G2268435
TU2595050 lncRNA downstream 101459 29049148 ~ 29091292 (+) True G2268502
TU2595086 lncRNA downstream 154572 29102261 ~ 29106107 (+) False G2268532
TU2595084 lncRNA downstream 155447 29103136 ~ 29105588 (+) True G2268532
TU2595095 lncRNA downstream 174130 29121819 ~ 29122187 (+) True G2268538
NM_001124666.1 mRNA upstream 39779 28885566 ~ 28888962 (+) True cd40l
XM_021583835.2 mRNA upstream 90063 28835262 ~ 28838678 (+) False LOC110504942
XM_021583837.2 mRNA upstream 90063 28835290 ~ 28838678 (+) True LOC110504942
XM_036970375.1 mRNA upstream 94572 28819095 ~ 28834169 (+) True LOC110504941
XM_021583833.2 mRNA upstream 180479 28728016 ~ 28748262 (+) False LOC110504939
XM_021583846.2 mRNA downstream 116075 29063764 ~ 29068534 (+) True LOC110504946
XR_005041173.1 mRNA downstream 160355 29108044 ~ 29112791 (+) True LOC118946044
XM_036969752.1 mRNA downstream 549131 29496820 ~ 29501604 (+) False f9a
XM_021583859.2 mRNA downstream 549132 29496821 ~ 29501604 (+) True f9a
XM_021583865.2 mRNA downstream 869891 29817580 ~ 29825990 (+) False LOC110504958
TU2594947 other upstream 30662 28896755 ~ 28898079 (+) True G2268400
TU2594875 other upstream 161012 28766877 ~ 28767729 (+) True G2268340
TU2593017 other upstream 1992852 26934720 ~ 26935889 (+) True G2266826
TU2592839 other upstream 2307793 26591266 ~ 26620948 (+) True G2266668
TU2592687 other upstream 2556258 26361992 ~ 26372483 (+) True LOC110504416
TU2597789 other downstream 2229201 31176890 ~ 31181107 (+) True G2271027
TU2599828 other downstream 3915747 32863436 ~ 32863779 (+) False G2272912
TU2600208 other downstream 4468401 33416090 ~ 33421685 (+) True LOC110505056
TU2601118 other downstream 5254394 34202083 ~ 34207415 (+) True LOC110505080
TU2601139 other downstream 5284306 34231995 ~ 34232604 (+) True G2274048

Expression Profile