RNA id: XM_021583846.2


Basic Information

Item Value
RNA id XM_021583846.2
length 2530
RNA type mRNA
GC content 0.48
exon number 2
gene id LOC110504946
representative True

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 29063764 ~ 29068534 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACTACCACTGTTATTGCCACAAATCAAGAGGGCAAAGTGAACGGCATGGGACTCACACTAACTTTAACGAACTTGAGTCTGGTTCCTACTACTGGGAAGTTCACGGCCAAACATTTCACATGCAGATGATAAGCAGCATAGAAAATGGAAACAAGATTTCTGAAAACAAGATTTCTATGTAAATCTTGAGCACAGAATTGGTTGATTTTGCAAACTCACAGACAAACTCACAGCAAAACATGACAAGCCTGTCGAGGTTTAGTGGCTGTCCTCTTTCTTGCGTCAACCCCGGGGAGAGCAATACTGAACCCAGCGTGGTGCTGCCACCTTTGGCAGGGGAGCACATGGGGCACCCCACTGGCAGTTCCTTAAAACTCTGCCCCTCGCACAATTTGCGAGACTACCCTGAGACGAGGTCCAGTGCATATGTTGACCATTCGGTTCCCCATTTTGGAGACTCTGGATACCCCAGCCACCGTTTAGAGCACAGCCCTAGGGGTATTATCATTGGAGCCAATCTTTCTGGAACCGGAATGCCACCCGTCACTGATCAACTGGCATCAAGAAGTAACCAACATGGCGGGATTGGAAGGTACCGTGACCTGCCTAGCTATAGAGATAGCAGAAGCCATGCTTTTTTCACCGCATATCACGAGCAGGCCCATGGTTCTTCCGAAGCGACCCGAGATCTCTCCGGTCAAGTGATGTTGGGTCTACCTGGGGACCTCCTCACCCGGACGCACCCTTACGGTCAGAGCATCAACGGCCCCAGGGGAAACAGCCAACAACTCGTTTCTCAGTTCCTGGGTCTCTACAAACCGCTGAACATGGCAATTCATCGTGGAGGTGACGCTTTCCTTAGGTGCTCCAGACAGAACCTGAAGCACGAACTGGTGTGTAAGTGGACTGACAGCCAAGAGGGGTCTGGGAAGCAGTACTGCACCCGAACTTTCGGGACTATGTATGAACTTGTCACCCATGTGACAGTGGAACACGTCGGAGGACCAGAGCACTCTGAATACGTGTGTTACTGGGAGAATTGTCCGAGGGACAGAAAGCCTTTCAAAGCCAAGTACAAGCTGGTGAACCACGTCAGAGTCCACACAGGGGAAAAGCCATTTCCCTGCCCTTTCCACGGTTGTGAAAAAGTTTTTGCAAGATCAGAGAACCTCAAGATTCacaagaggacacacacagGTGAAAAACCTTTTAAATGTGAGTTCGAGGGCTGCAATCGGAGGTTTGCTAACAGCAGTGACAGAAAGAAGCATTCTCACGTGCACTCCAGTGATAAACCCTACATGTGCAAGGTCAGAGGGTGTGAGAAGTGTTACACCCACCCAAGTTGCCTCCGGAAGCACATGAAGCTCCATTGCAAGGTCTACAGCGCGAAAAGCAGCGATGGGCGCGATGGGGACGGGGAACACCTTGCAGAGGCCAGGTCACCCGAAGTAACAGATCAATCCGAGACCGCCTCGTCCACCACGGTGACACAACCTCAGCCCCCCACTTCCCAAGAGTCCTTATCCCCTGAGCTTCAAAACGAGTCCACTCTGAGGTCACGTTTCCATCACACATTCGACAACAGTTTGGACTACACCTCACATAGGTCGCAGGGCCTCTTGGATCCATTGTTGATCCAGAGGAGCAGTTACAGACCAGAGCCCACCCAATACCCATGCAGCCAGGCAGGCCACAGTTTCGCCCAGAGCTCCAGGACATTCCCCACTGCCTCACCCTTTCAGAAAAGTATTGTCAATGGGTGGTATACGTGCCACAGTGGCGTGGACGCTTTCTCACCAAAGCAGTGTAACAACGACATATCATCCATTTGACTCAGTTATGTCGCCTGAGTGACGTTGACCTACACAATTTGGGATTATTTCTGTTATGACATCTGTTATTCTTGAATTATATAGGCCTATTATTGCGTGTGTTTTTTCTTCTTCGATGTTGTAAATGTGCCACGTCGAAGTTATTATGTGTCGTAGTTTTGAAAACTTGCTCAACTATATATACAGCGTTGCAAAATGCGTGATGGTAAGCTTTATCTGTTCTGTGACGCACAAACTATATAGGCCTATGTGTGGTGGGCCTTGAGTTATGTCAGTTGTAAGAAACGGGCCTATTGTGACACACGTGTAGGCTCCAGTGAACACTCCTCCCCCTTCTGTTGGAGTATTAGAATAGAACATCATGAATACAAATGctgtctacagtatatctgcTTATTATTTGAATGATCGCTATCATAGATGCTTGCTATAGGACAAGGGAACGAAATGGATTCAACGGGGATGTCTATGCGTCGATATATATAGGTCTATATGCATATCTGAATGTAGCAAACGTGATATAAAAGGAACTATACTTGTATTGTTGCTTGGAAGGCTATACCAGTATATATAAAGGACTGGGTCTTCGTGGAatgttactgtattgtattgtgggaAAGCATAGAAACGTGCATTACTTATGTCGTGTTTAATGTAAAGCAGAACTTGGAAATAAAATATGATTGAAAACCTA

Function

GO:

id name namespace
GO:0021510 spinal cord development biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K09227 ZICN; zinc finger protein ZIC, invertebrate

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2594982 lncRNA upstream 101804 28961570 ~ 28961960 (+) True G2268435
TU2594973 lncRNA upstream 119206 28944064 ~ 28944558 (+) True G2268426
TU2594966 lncRNA upstream 139203 28923646 ~ 28924561 (+) True G2268419
TU2594935 lncRNA upstream 188604 28874878 ~ 28875160 (+) True G2268392
TU2594927 lncRNA upstream 197351 28866152 ~ 28866413 (+) True G2268384
TU2595086 lncRNA downstream 33727 29102261 ~ 29106107 (+) False G2268532
TU2595084 lncRNA downstream 34602 29103136 ~ 29105588 (+) True G2268532
TU2595095 lncRNA downstream 53285 29121819 ~ 29122187 (+) True G2268538
TU2595160 lncRNA downstream 152854 29221388 ~ 29223547 (+) True G2268598
TU2595161 lncRNA downstream 155911 29224445 ~ 29233975 (+) True G2268599
XM_021583838.2 mRNA upstream 116075 28928741 ~ 28947689 (+) False LOC110504943
XM_021583839.2 mRNA upstream 116075 28928741 ~ 28947689 (+) True LOC110504943
NM_001124666.1 mRNA upstream 174802 28885566 ~ 28888962 (+) True cd40l
XM_021583835.2 mRNA upstream 225086 28835262 ~ 28838678 (+) False LOC110504942
XM_021583837.2 mRNA upstream 225086 28835290 ~ 28838678 (+) True LOC110504942
XR_005041173.1 mRNA downstream 39510 29108044 ~ 29112791 (+) True LOC118946044
XM_036969752.1 mRNA downstream 428286 29496820 ~ 29501604 (+) False f9a
XM_021583859.2 mRNA downstream 428287 29496821 ~ 29501604 (+) True f9a
XM_021583865.2 mRNA downstream 749046 29817580 ~ 29825990 (+) False LOC110504958
XM_021583866.2 mRNA downstream 749046 29817580 ~ 29825990 (+) True LOC110504958
TU2594947 other upstream 165685 28896755 ~ 28898079 (+) True G2268400
TU2594875 other upstream 296035 28766877 ~ 28767729 (+) True G2268340
TU2593017 other upstream 2127875 26934720 ~ 26935889 (+) True G2266826
TU2592839 other upstream 2442816 26591266 ~ 26620948 (+) True G2266668
TU2592687 other upstream 2691281 26361992 ~ 26372483 (+) True LOC110504416
TU2597789 other downstream 2108356 31176890 ~ 31181107 (+) True G2271027
TU2599828 other downstream 3794902 32863436 ~ 32863779 (+) False G2272912
TU2600208 other downstream 4347556 33416090 ~ 33421685 (+) True LOC110505056
TU2601118 other downstream 5133549 34202083 ~ 34207415 (+) True LOC110505080
TU2601139 other downstream 5163461 34231995 ~ 34232604 (+) True G2274048

Expression Profile