RNA id: XM_036970262.1


Basic Information

Item Value
RNA id XM_036970262.1
length 2202
RNA type mRNA
GC content 0.43
exon number 6
gene id LOC110504959
representative True

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 29838862 ~ 29847848 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gacagctgacgcttaaagttagtggggagatataagtctccaacttcagtgatttttgcaattcgttccagtcaacTATATATAGTCAACTATATTAACAAAATATGGGAATATCCTGTTTTATATTATGAATCCCATAGTCTGAATAGAGCAATAGACATTGCATTAAAATACTAATTTTTACCCATTCCTGTCCTTTGCCTGACCTTTTCCAATGTATCTCTATCGGGGCTCTCCacccctgttcctggagagctgccGTCTTGTAGGTTTTTgatccaaccctaatctagcgcacctgattctaataattagccgGTTGATGAGCTGAATACGGTTAGTTACTgctggggttggagcgaaaacctttcaggagggtagctctccagaaacaggTTTGAAGAGCCCTGCGCTAAGTAGTCTTTTGACATTTCAATGTCCCTTGGAGACAGCGTAACACAGTGCAGAATGACCATAAAAGATGTGTCAGCCGCCACCATGTACGACGTCCTTCATGATGGCCTGTATCGCAAAAAGTGGGACCCCACCATGTTGGAGAGCTTTGACATTGCCCGTCTCTCCCCTAACGCTGATGTGGGCTACTACTCATGGCTGTGTCCGAAACCACTGAGGAACAGAGATGTGGTGACGCTGCGTTCGTGGCAGGTGACGGACGACGAGTATGTGATCGTTAACTACTCAGTCAAACACCTGAAATATCCTCCCAAAAAGGACCTTGTGAGAGCCATCTCCCTCCTGACTGGCTACCTGGTGAAGGCCACAGGACCCAATAGCTGCTCCTTTACCTACCTCTCACAGGCTGACCCCAAAGGTTCTCTTCCAAAGTGGGTGGTGAACAAAGCATCTCAGGTTCTGGCTCCCAGGgtCCTGAAGTGTGTGCACAAGGCGGGCCAGAGTTACCCAGAGTGGAAAGAGCAGAACTCTCCAGATCAGAAGCCCTGGTTGTACCCAGAGCAAAGCACCCTGCCCATGATGGACCCGGCCGAGCTGACCATCCAGCGGGCAGACTCTCTGGAGAACGTAGATGAGAGCTCTCAGCTGGACATTCAGGAGAGTAACAAAGCAGAGGACAGCAGCTGAGCACGTCTGTCAGAGGGGATGAAGCCTAGACAAGAGAGGATGGATGGACAAGCTCATGCAGACCTAAAGACTCAAGTCCTCAACCTCTCCATGGCACATGATCCCAATCTTTAAAGTTTTAAGATCCACCCCCAATTTATTTTGTACTTATCCAGTTTTTGCCTTATAAACCACTATTTATGCCTATATGGAGGACGAGAGAATAAACTGTTTACATCTGTTTGGCCTTATGGAGCTGAACAACATACCAACGAGTGGGAATTCTGGTTCTTCCCCTCCACCTGAACTGATAATGCAGCCAGTTTTTGCCAACGAACTGTGCCGACTCCAGACAATGCACTGGCAGAGGTGCTAGATGGACTTGGTTGTTGATTGTTACGTACAGCTACTTTTAGAAACGACAGCATCAGGTATTTTATATTAGCAGCCATGCTTGATAGTTTTTTATACAATTTGATATGAGGTTTGGAATAATTCAGAACCAAGTTAAAGAAGAGCCAGGATTGGCTGTTTTGATTTCCTGAGTATAAATTCAAGTGAAAAGATGTATTTGTGTatgatgtttttttatttgatgGAATACTTGTTTTTTGAGCTACATTGTATTTCACTATTGTCTTTATGACTGGAAACCATGAGTATGACTACACAGAAAGTGCCTTGTTATTCTGTAGGTTCCCAAATTGGTATTTATTGAAAGTTTGTGCAATCTGGGAGGGAGACAGTGGAATTCATTCCATTGCTGGTTATATACCCTTGGGATATATGCTTGGTATGCATGCTTTGGACTTACTGTAGGCACTGCATATAGGAACCAATGGTGACTTAATTAAATGGAAATAGTTTTAGCAAAATATCACACATAGTATTTTAACAAATGTACACAGTGAATTGTATGATTTCTTTTGTGTTTACCTGAAGAATCACCATCATAGATCTTACCCCTTTTAAAGTGTATTTATTTTCATAAAGTTACTGATAAGTAATGTCATGACAGAGCAAGCAAGGATTCTGAAGTTAGCCTTGCATACAGCTCTTGAACTTGACTTTGAAGACAAATGATTGtaaagttacattttttttaataaaccTCAGATAAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2596578 lncRNA upstream 10508 29830285 ~ 29830587 (+) True G2269910
TU2596569 lncRNA upstream 27675 29813183 ~ 29813420 (+) True G2269901
TU2596554 lncRNA upstream 52296 29788597 ~ 29788799 (+) True G2269886
TU2596548 lncRNA upstream 57539 29783338 ~ 29783556 (+) True G2269880
TU2596547 lncRNA upstream 58273 29782467 ~ 29782822 (+) True G2269879
TU2596590 lncRNA downstream 69965 29917813 ~ 29918573 (+) True G2269919
TU2596631 lncRNA downstream 110359 29958207 ~ 29958876 (+) True G2269958
TU2596677 lncRNA downstream 213366 30061214 ~ 30062012 (+) False G2270001
TU2596678 lncRNA downstream 213366 30061214 ~ 30062077 (+) True G2270001
TU2596688 lncRNA downstream 240101 30087949 ~ 30088478 (+) True G2270010
XM_021583868.2 mRNA upstream 2387 29830924 ~ 29838708 (+) False LOC110504961
XR_002470665.2 mRNA upstream 2393 29830922 ~ 29838702 (+) False LOC110504961
XM_021583870.2 mRNA upstream 2393 29830924 ~ 29838702 (+) False LOC110504961
XM_021583871.2 mRNA upstream 2393 29830925 ~ 29838702 (+) False LOC110504961
XM_021583869.2 mRNA upstream 2393 29830927 ~ 29838702 (+) True LOC110504961
XM_036969800.1 mRNA downstream 25023 29872871 ~ 29887511 (+) False LOC110504963
XM_036969799.1 mRNA downstream 25030 29872878 ~ 29887511 (+) False LOC110504963
XM_021583877.2 mRNA downstream 25031 29872879 ~ 29887511 (+) False LOC110504963
XM_021583879.2 mRNA downstream 25031 29872879 ~ 29887511 (+) True LOC110504963
XM_036969790.1 mRNA downstream 40241 29888089 ~ 30069203 (+) False LOC110504964
TU2594947 other upstream 943016 28896755 ~ 28898079 (+) True G2268400
TU2594875 other upstream 1073366 28766877 ~ 28767729 (+) True G2268340
TU2593017 other upstream 2905206 26934720 ~ 26935889 (+) True G2266826
TU2592839 other upstream 3220147 26591266 ~ 26620948 (+) True G2266668
TU2592687 other upstream 3468612 26361992 ~ 26372483 (+) True LOC110504416
TU2597789 other downstream 1329042 31176890 ~ 31181107 (+) True G2271027
TU2599828 other downstream 3015588 32863436 ~ 32863779 (+) False G2272912
TU2600208 other downstream 3568242 33416090 ~ 33421685 (+) True LOC110505056
TU2601118 other downstream 4354235 34202083 ~ 34207415 (+) True LOC110505080
TU2601139 other downstream 4384147 34231995 ~ 34232604 (+) True G2274048

Expression Profile