RNA id: XM_036969793.1


Basic Information

Item Value
RNA id XM_036969793.1
length 5034
RNA type mRNA
GC content 0.50
exon number 21
gene id LOC110504964
representative False

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 29888089 ~ 30069203 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccctctcgctctctttctctccatctcgcttGCTCGCCTCCCTCTGTATAATCCACATCTAGGGCAAGCTGATTGAGAGCCAGTCCAGTGCTCAGCTCCTCTCTGCAggctgagaaaagagagagagaaagacatagaaACGCTGCTTCTCAACGCAGGAGGAAAAACGGGAGGAAGAAAACGGGTTTGGAAAAAGGGAAGAGAAATACCGAGGAAGATTTCATCTGAGGATATCATTTATACCTGTACatattgtttatatatatatatttgtacacACGCATATAGATATTTATATACAtatttctctgtatatatatctgtgtatTTGTGCTTGTCTGTTTATACTAATATTTttatatgtatttgtgtgtgtgtgtgtaaatatatataaacaaattAATATATCTATGAATTTATATACATATCACTGTGAAACAAGAGCAGCAAGAGGAAAATGTACCATCGGGGCTGGTCTCTGATTGTGTGATCGTATACAATATTTTCAATATTCTTTTCTTTTATCTTCTACGTCAAGAGGAAGGAAGACTACGTACTCATTTTTTGTTTTCCTGTTGCTACTTCCACCTCCTCGCTCTTTTTTTTGTCATCTGAGGGGAATAAAGAGAGGAGAGTAACAGGATTTGGAGAAAAGGGGAAAATCTGTCGAATTGCTGTGATTAGTGTTATTTTCGTCGGTATTAGTGCTCTGCGAGCCGATCGCAGCGTGCTGCGTGTGATCTGAGGAGGCAGCAGAGAGAAAGTGCCACACCACGCCGCTCAGCGCCAGCCCAGCTCCAGCCCAGCTCCAGCCCAGCTCCAGCCCAGCGCCAGCCCAGCTCCAGCCCAGCTCCAGCCCAGCTCCAGCCCAGCGCCAGCCCAGCTCCAGCCCAGCTCCAGCCCAGCTCCAGCCCAGCTCCAGCCCAGCTCCAGCCCAGCCAGCATGCACAAACACCACCACTGCTGCAAGTGCCCAGAATGTTACGAGGTGACCCGCATGGCCGCCCTGCGCAGGATGGACGCCCCTCAGTACCAAGAATGGCAGGCCGAGCCCTATGGATACCCGGCCGGGTACGGGCCTGGAGGCGGGCAGACCTTACCCCAGCCTCCAGTctcagggggaggaggaggaggaggcatgggaggaggagggggcactCTGGGGAGAAGTAAGGGCAAGATGACGTCTGCTGGGGGTCCCGGAGGCCCAAACCCCAAGGGCCAATCCAAGGGCGGCACCAAGGTGAATGGCAACAATTCTGGTGGTCAAGCAGGTTGGTGGCCGGAGTGCACCTGTTCCAACCGGGAGTGGTACGACCAGGCGAACCCTCCCCCTGTCATCGTCAACGCAGACTCATTGGATGCAGGCCCTTATGTAAATGGCAGTGATGGGATGTATAAATATGACGAGATCATCTTGGAAAGGGGTAACTCTGGCCTGGGCTTCAGCATCGCTGGGGGGATGGACAATCCACACATCCCAGATGACCCAGGGATCTTCATCACCAAGATCATCCCTGGTGGAGCTGCAGCTATGGACGGCAGGCTGGGGGTGAATGACTGTGTGCTGCGTGTGAACGAGGTGGATGTCTCTGAGGTAGTCCACAGCCGGGCGGTGGAGGCCCTGAAAGAGGCTGGCCCTGTGGTCAGGCTGCTGGTCAGGAGAAGACAGGCCCCTCCTGAGACCATCCTGGAGATCAACCTGCTCAAGGGGCCCAAAGGCCTTGGCTTCAGCATCGCTGGGGGGATCGGCAACCAGCACATCCCTGGAGACAACAGCATCTACATCACAAAGATCATCGAGGGCGGGGCCGCGCAGAAAGACGGACGACTGCAGACCGGAGACCGCCTGCTAGCTGTGAACAACATCATCCTGCAGGACGTGCGTCACGAGGAGGCGGTGGCGGCGCTGAAGAACACCTCTGACATGGTCTACCTCAAGGTGGCCAAGCCCGGACCCGTGCACCTCAACGACATGTATGCCCCTCCAGACTACTCCAGCACCTTCCCCACCATGGTGGACAACCACGTCAGCCACAACTCAGGCATGGCCTACATGGGAGCTATGGAGCCCAAGCCCGTCTACAGCCAGCCCCCCCAGGTCACGCCCTCCAGGTACTCCCCAGACCCCCGTCACATGCTGGGGGAGGAAGACTTCACCAGTCCCGGCCCGCGCCCTGACGCTGTTGCTCTGTTTGGCAGGGAGCCGCGGAAAGTGCTGCTGCACAAGGGCTCCACGGGGCTGGGCTTCAACATCGTGGGCGGCGAGGATGGAGAGGGCATTTTTGTCTCCTTCATCCTGGCCGGAGGACCAGCAGACCTGAGCGGAGAGCTCAGAAGGGGAGACCGCATCCTCTCGGTGAATGGGGTGAACCTGCGGAATGCCACCCACGAGCAGGCAGCTGCAGCGCTGAAGAGGGCCGGCCAGACGGTCACCATCATCGCCCAGTACCGACCAGAAGAGTACAGCCGGTTTGAGTCCAAGATCCACGACCTGCGGGAACAGATGATGAACAGCAGCATGAGCTCTGGGTCGGGCTCCCTGCGCACCAGCGAGAAACGCTCCCTCTATGTCAgagctcTGTTTGACTACGACCGGACCAGAGACAGCTGTCTGCCCAGCCAGGGCCTGagcttctcctatggggacatccTGCATGTCATCAACGCCTCCGATGACGAGTGGTGGCAGGCGCGCCTGGTCACGCCCCACGGGGAGAGCGAGCAGATCGGGGTCATTCCAAGCAAGAAGAGGGTGGAGAAGAAAGAGCGAGCGAGGTTAAAAACAGTCAAGTTCCACGCCAGGACGGGCATGATCGAGTCCAACCGGGACTTCCCAGGGTTAAGCGATGACTTTTATGGATCAAAGAGTTTGAAATGCCTGACGTCAAACACCAGCGACAGTGAAAGCAGCTCAAAGGGCCATGAAGACACAATTCTCTCATACGAGCCAGTGATTCGACAGGAGATTCATTACACGAGGCCTGTGATCATCTTAGGCCCAATGAAAGACCGAGTTAACGATGACCTGATTTCAGAGTTCTCTCACAAGTTTGGCTCCTGCGTTCCTCACACGACACGTCCGCAGCGGGAGAACGAGATGGACGGCCAGGACTACCACTTTGTGGGCTCGCGGGAGCAGATGGAGAAGGACATTCAGGATAATAAGTTCATTGAGGCGGGCCAGTTCAACGAGAACCTCTATGGGACCAGCATCTTGTCTGTCAGAGCAGTGGCTGAGAGGGGAAAACATTGTATCCTGGACGTGTCTGGGAACGCTATAAAGCGACTTCAACAAGCACAACTTTATTCGATCGCAATTTTCATCAAACCAAAATCCATTGAAGCTCTTATGGACATGAATAAGAGACAGACTTACGAACAAGCTAATAAAGTCTTTGATAAAGCAATTAAGCTTGAACAAGAGTTTGGAGAATTTTTCACAGccattGTACAGGGTGATTCGCTAGAGGAGATCTACAACAAAATCAAGATGATCATTGAGGAACAGTCGGGCCCCTACATCTGGATACCTTCTTCAGAGAAGCTCTGAGCTCCCCAGCTGTACCCCTCTGTCGGCGCAGAGACCCCCCCCTCCCGACACACCGCCCATCCCCCGAAGagctcctccctcccccttttttGCAGATATGTGTCATATCAAGTTTTAGTGTCATCATTATGTTAATCTCAAATGAAAACTAGTCTTATCACCATTTCTGTGACTGTGCACACCCCTGCATGAGTTTCTCAGCAAATCCATTCAAGACTGGAAATGCCATTTCAAATGAATTTGTCATTTTAAAACAAAACAAGGGAAAAGCAAAATGAATCGTTCTTTGTGAAATGGGACTGACAGTTGAAGATCAGAATGTTTTACAGACGACGCTGGAGTGAGGAGGAGTTAGGGATTCAGGAGAAGTTGCAGACCAATCATACAAGTTGGAACACTGTAAATGttcatcaaatcacatttttaaaaaagacACGCAAGATGAGAAGCAAAGACCACTTCGGTTTTTTTTCTACAAGGACTGGATAATATCAAGCCCAGCTGATGGTACTGTTGGAGTTATTGCTCTTCTTTGTAATTACTGAAGAAATTGGTGGAGAAGCCTACAGACTGGTGATCTACCAGCTTGCTGTTTGATCAGCTGCCAGTTGTTGGTGCTGCAGCTGATACAGACCTCTTGGGAGGCAGAACCAATGGAAGAAATTAGTTATGAATCTCTACATTTATATAATGAAATCACAAGGTAAATCATCAAATCCTACTGCGATTTTACTACATATTAAAAACTACACGTTTTACACTTCACTAGAATTGTCTACTTGGAGGGCTGTTAGAttgtttttttggaggggggaTTTTTTTGCTTGTGGTTTTTAGCTGCTCTGTGTAAAGGATGGGGGTAGAGAAGTGTAACGGGGCTCTCTGCAAAACACCAAACTGCCTTACATCAAATATAAATTGTTATATTACTACCTGTACTTTGAGGGAAGCTATAAAtaattgacaacaaaaaaaagatggaactttttattttaaatgttaacTTTTTCTGCGTTGTCTCCTGACTTCCAGGAGGTCTAACTTGTGAGTGCAATAGACAAACGCATCGCACTTCCGTGGATTTCTATCTTCCCTTTGTATTCTTTTTGACCCTTTTCCTGTTATAATTTAAGATTTGATTGGATTTCAATTTAGGCAGCCATAGCTCCCTCACCCACGTTGAGCAGCAGATCACCCTATTACACTCTCTACCTTCCAAGAGgagtgtgtcttctgattgaatGGTCACATGGTACTGTCCTGAATATGCCATCATGAAGGTGGCCTTAAAAACGGGTAGAACGAGACAATACTTGTATTGGATGTCCTAACAGAGGCAATTTAACCTGCTTTTGGATTGTCCCCTTTCCCCCCCCACCCAAAATAACACTAAAGAGGGGTTTGATTAAAACCTACattgcattcgtaaagtattcagacttcttgactttttttcacattagtcttattttaaaatggat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2596590 lncRNA upstream 17283 29917813 ~ 29918573 (+) True G2269919
TU2596578 lncRNA upstream 105269 29830285 ~ 29830587 (+) True G2269910
TU2596569 lncRNA upstream 122436 29813183 ~ 29813420 (+) True G2269901
TU2596554 lncRNA upstream 147057 29788597 ~ 29788799 (+) True G2269886
TU2596548 lncRNA upstream 152300 29783338 ~ 29783556 (+) True G2269880
TU2596688 lncRNA downstream 18746 30087949 ~ 30088478 (+) True G2270010
TU2596959 lncRNA downstream 39327 30108530 ~ 30108758 (+) True G2270258
TU2597009 lncRNA downstream 132133 30201336 ~ 30202893 (+) True G2270307
TU2597069 lncRNA downstream 139183 30208386 ~ 30208626 (+) True G2270364
TU2597079 lncRNA downstream 142934 30212137 ~ 30212347 (+) True G2270374
XM_036969800.1 mRNA upstream 48345 29872871 ~ 29887511 (+) False LOC110504963
XM_036969799.1 mRNA upstream 48345 29872878 ~ 29887511 (+) False LOC110504963
XM_021583877.2 mRNA upstream 48345 29872879 ~ 29887511 (+) False LOC110504963
XM_021583879.2 mRNA upstream 48345 29872879 ~ 29887511 (+) True LOC110504963
XM_036970262.1 mRNA upstream 88008 29841095 ~ 29847848 (+) True LOC110504959
XM_021583881.2 mRNA downstream 46322 30115525 ~ 30205688 (+) True LOC100136647
NM_001124632.1 mRNA downstream 150727 30219930 ~ 30223418 (+) True cdx1
XM_021583883.2 mRNA downstream 155753 30224956 ~ 30228155 (+) False LOC110504968
XM_036970193.1 mRNA downstream 155753 30224956 ~ 30228155 (+) False LOC110504968
XM_021583882.2 mRNA downstream 155755 30224958 ~ 30230188 (+) True LOC110504968
TU2594947 other upstream 1037777 28896755 ~ 28898079 (+) True G2268400
TU2594875 other upstream 1168127 28766877 ~ 28767729 (+) True G2268340
TU2593017 other upstream 2999967 26934720 ~ 26935889 (+) True G2266826
TU2592839 other upstream 3314908 26591266 ~ 26620948 (+) True G2266668
TU2592687 other upstream 3563373 26361992 ~ 26372483 (+) True LOC110504416
TU2597789 other downstream 1107687 31176890 ~ 31181107 (+) True G2271027
TU2599828 other downstream 2794233 32863436 ~ 32863779 (+) False G2272912
TU2600208 other downstream 3346887 33416090 ~ 33421685 (+) True LOC110505056
TU2601118 other downstream 4132880 34202083 ~ 34207415 (+) True LOC110505080
TU2601139 other downstream 4162792 34231995 ~ 34232604 (+) True G2274048

Expression Profile