RNA id: XM_021583887.2


Basic Information

Item Value
RNA id XM_021583887.2
length 2551
RNA type mRNA
GC content 0.43
exon number 6
gene id LOC110504970
representative False

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 30272277 ~ 30282447 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCATGTCAAACGCTCTACTTCGAGGTACATTTGTTTGTCTTGCCtagttgattaaataaaaaataaaaaacgttaATACACTAAATAGCCACCAGAGGACAAGCTTTTCCCTGGAAGAGAACCTTGATGTCCCCACGCCTGCCCAGTGCATTCAGTATCGGCCATGTCTGGTTGCGAGACAgaatacagcttttgtcaaatgtGATGTAAAAAacaaaacCCTCAGTACCGCCTCCCCTCAGACCAACGTGACAGGAATCAGAATTGCGGATGACGGTGCCACTGGGTCTTGTTTTCAGTTGGCCTTAGATAAACAAGCGGTGCTGCTGGTCCTACAGACAATCTACGGATGAGATAGTAGAATCGGCTGGGGAAGTCGGTTACATACAGAGCTAGAGTAATGGCAACAGTTAAACCAGATGACAGACTGACACGTTCTCAGGGCTTTATGTGCGTTGGTTTTGCTGGAGTTTTCAGTAAAACTGTCACGTCGCCTCTGGAGTTGGTGAAAATCAAGAGTCAAGTAGGCACATTTCACTGTAAAAAAGGCTTTCTGCACAGCTTTCTTGTCGTCTACCAGAATGAAGGCCTATGGGGATTTTGGAAGGGAAACCTCGTCTCCTGTCTCCGCCTGTTTCCTTACAGCGCCGTCCATTTGGCAACATACAAACATATCGTCCACCTCCACATGGATGAATTGGGCTACATCTCTCAGTGGAGGGCAATTTTGGCTGGTGGGCTAGCTGGTGTAAGTGCTGCACTGGCCACGTACCCTCTGGAGGTGGCAGAGACTCGCCTCATAGCTCAGAACTGCAGAGAGCCCACATACAGGGGGGTGGTCCACACACTCTCCAAGATATACCAGACCGAAGGCCTTCGAACACTCTACAGTGGATTCTCTCTCACAGTCCTAGGTGCGTTTCCCTTCTCCATTGGTTGCTATGCAGTCTACGTCAACTTGGATAAGCTGTGGCGGGAGCCCCAATTCCGGTTCACACCACTACAGAACTTCATAAATGGTTGCTTAGCGGCAGGAATAGCTCAAACCTTCTCCTACCCCTTTGAAACTGTGAAAAGGAAAATGCAGGCCCAGAATCCTCGGCTCCCACATTACGGTGGGGCCGATGTCCACTTCACTGGAATGCTGGACTGCTTCAGGCAGGTGATCAGAAACAAGGGCATCCTGACACTGTGGAGTGGCATCACAGCCAACATGATCAAGATTGTCCCTTACTTTGGGCTTCTCTTCAGCTGCTTTGAGATGTGCAAGCAGGTCTGTCTGTACCGCAACGGGTACATTGTGTCTCCATTGAGCTATAAGTTGGCACCAGGAGTGGACCAGAGCATGGGCCCCACTGAGGTAGAAGAAGTGAAACGGTACCTGAAGAATAGGAGTTTTCAGTCACAGCAAGGAAGTCGCTGGTAAAACTGGTGGATCAAAAATATTTCTGAAAGGGATGATGATCATTAGTACAGGAACGTGTCTGAATGATGATGGAAAGGAGTCAGGAATATTTGTTGGAATGCTTCAATGCTTTGAAGATGACTATTTGGTTGATGTCAGGTCTTTTACAGCTTTGTGTTTGTGTATTAGCAACCATTTCAGAATCAGAGGTAGATCCATTGATATTTGAAAGTTGCAATGCAATCATAAGAATTGCACTTCAATACTTAACACATGGGAAAAAACTTTAACTGTTTGTTCATCAATTCCTCATTCAgagtttaaagtattttttttatgatAGTTTTTTGACAGTTCTGTGTTATTACTACAGTTTATTCATGCTTatgggctgcaggtagcctagaggctAAGAGCTTTGGGACATTaagcgaaaggttgctggtttgaatccctgagctgctGATGTGCCATTGAGCTTGGCacgtaaccctaattgctcttgataacagcgtctgctaaattaccattTTTAAATGTTACGGCGCTGACCTGGTTCTAACAATGGTCTTGGCCTTACGTAATGGCCATGAAGAGGAACACAAAGCACAAACCTGTTTATAAAATGGAATTATCTTACAAAGCAAAtgaatgttttttttcattgtatttgtAATGTAGTAACGACTATTTTAACAGACTTGGGTATATCATATTTATGTGCCTTAAGGTTTCCTTTATTGATTATAGGGCTTATTTTGATGACTGTTTAAATTATGATAGGTAGTTATGTAATTATTCACACAGGTATCTGAGTCGAAGCCATTAATCAGTTGCTAACTTTCATAGCACATACTGTATCGTTGTGATCCTAGCAATAAAATTGTAACTGAAGCACTTCAGTGTCACTGAGAATTAAAGGGGAAAGGAAACACTAGGCTTTAGAATGCCAGTTCACTGTAACTAACTCCTaaagtgtttccattcccctttaagatTACGTGTATACGGTATGTAATACATTTGATGGATGAAACTATGCAAATGTATAATTAATGATTTTAGATTGAGATGATTCAGAATCATTGAAGTAAATTTTACTTGAACAGTCATTGTAATGGACAAATAAATTCCTTTGCTAAGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2597116 lncRNA upstream 8381 30263545 ~ 30263896 (+) True G2270407
TU2597093 lncRNA upstream 40293 30231773 ~ 30231984 (+) True G2270388
TU2597087 lncRNA upstream 56073 30215906 ~ 30216204 (+) True G2270382
TU2597079 lncRNA upstream 59930 30212137 ~ 30212347 (+) True G2270374
TU2597069 lncRNA upstream 63651 30208386 ~ 30208626 (+) True G2270364
TU2597130 lncRNA downstream 39517 30321964 ~ 30383010 (+) True LOC110504976
TU2597189 lncRNA downstream 100166 30382613 ~ 30427407 (+) True G2270478
TU2597275 lncRNA downstream 242221 30524668 ~ 30524958 (+) True G2270553
TU2597279 lncRNA downstream 250454 30532901 ~ 30533121 (+) True G2270557
TU2597296 lncRNA downstream 260333 30542780 ~ 30543017 (+) True G2270573
XM_021583882.2 mRNA upstream 42089 30224958 ~ 30230188 (+) True LOC110504968
XM_021583883.2 mRNA upstream 44122 30224956 ~ 30228155 (+) False LOC110504968
XM_036970193.1 mRNA upstream 44122 30224956 ~ 30228155 (+) False LOC110504968
NM_001124632.1 mRNA upstream 48859 30219930 ~ 30223418 (+) True cdx1
XM_021583881.2 mRNA upstream 66589 30115525 ~ 30205688 (+) True LOC100136647
XM_021583888.2 mRNA downstream 1252 30283699 ~ 30286467 (+) True LOC110504971
XM_021583889.2 mRNA downstream 20141 30302588 ~ 30319039 (+) False LOC110504973
XM_036969771.1 mRNA downstream 21450 30303897 ~ 30319039 (+) True LOC110504973
XM_036969772.1 mRNA downstream 39376 30321823 ~ 30383240 (+) False LOC110504976
XM_021583900.2 mRNA downstream 194235 30476682 ~ 30479893 (+) True LOC110504981
TU2594947 other upstream 1374198 28896755 ~ 28898079 (+) True G2268400
TU2594875 other upstream 1504548 28766877 ~ 28767729 (+) True G2268340
TU2593017 other upstream 3336388 26934720 ~ 26935889 (+) True G2266826
TU2592839 other upstream 3651329 26591266 ~ 26620948 (+) True G2266668
TU2592687 other upstream 3899794 26361992 ~ 26372483 (+) True LOC110504416
TU2597789 other downstream 894443 31176890 ~ 31181107 (+) True G2271027
TU2599828 other downstream 2580989 32863436 ~ 32863779 (+) False G2272912
TU2600208 other downstream 3133643 33416090 ~ 33421685 (+) True LOC110505056
TU2601118 other downstream 3919636 34202083 ~ 34207415 (+) True LOC110505080
TU2601139 other downstream 3949548 34231995 ~ 34232604 (+) True G2274048

Expression Profile