RNA id: TCONS_00005406


Basic Information

Item Value
RNA id TCONS_00005406
length 117
RNA type rRNA
GC content 0.56
exon number 1
gene id XLOC_002922
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 35620333 ~ 35620449 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCCGGCAtctagctctctgcagctctcacatggtcgccaactgaagctaagcagggctgcacccagtcagtacctggattggaGAACACATGGGAACGCtataggttgctgctggaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000179013

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006091 lncRNA downstream 188678 35429504 ~ 35431655 (-) True XLOC_002919
TCONS_00005401 lncRNA downstream 298696 35312892 ~ 35321637 (-) True XLOC_002917
TCONS_00005392 lncRNA downstream 456042 35160010 ~ 35164291 (-) True XLOC_002912
TCONS_00006090 lncRNA downstream 561889 35054281 ~ 35058444 (-) True XLOC_002909
TCONS_00005382 lncRNA downstream 627905 34984618 ~ 34992428 (-) True XLOC_002907
TCONS_00005407 lncRNA upstream 30135 35650584 ~ 35654680 (-) False XLOC_002923
TCONS_00006092 lncRNA upstream 191303 35811752 ~ 35964401 (-) False XLOC_002925
TCONS_00006094 lncRNA upstream 191303 35811752 ~ 36093493 (-) False XLOC_002925
TCONS_00006093 lncRNA upstream 191303 35811752 ~ 36093493 (-) False XLOC_002925
TCONS_00006096 lncRNA upstream 191303 35811752 ~ 36093533 (-) False XLOC_002925
TCONS_00005405 mRNA downstream 6581 35584647 ~ 35613752 (-) True XLOC_002921
TCONS_00005404 mRNA downstream 78262 35537974 ~ 35542071 (-) True XLOC_002920
TCONS_00005402 mRNA downstream 209815 35367722 ~ 35410518 (-) False XLOC_002918
TCONS_00005398 mRNA downstream 362772 35250205 ~ 35257561 (-) False XLOC_002916
TCONS_00005400 mRNA downstream 362810 35255881 ~ 35257523 (-) True XLOC_002916
TCONS_00005409 mRNA upstream 43680 35664129 ~ 35668584 (-) True XLOC_002924
TCONS_00005411 mRNA upstream 584762 36205211 ~ 36207737 (-) True XLOC_002927
TCONS_00005412 mRNA upstream 592126 36212575 ~ 36214582 (-) True XLOC_002928
TCONS_00005413 mRNA upstream 596790 36217239 ~ 36220061 (-) True XLOC_002929
TCONS_00005414 mRNA upstream 601056 36221505 ~ 36223005 (-) True XLOC_002930
TCONS_00005403 other downstream 233091 35369837 ~ 35387242 (-) True XLOC_002918
TCONS_00005381 other downstream 627919 34984618 ~ 34992414 (-) False XLOC_002907
TCONS_00005358 other downstream 1292939 34327262 ~ 34327394 (-) True XLOC_002902
TCONS_00005343 other downstream 1586912 34032283 ~ 34033421 (-) True XLOC_002893
TCONS_00005331 other downstream 2243119 33377130 ~ 33377214 (-) True XLOC_002885
TCONS_00005408 other upstream 33796 35654245 ~ 35654354 (-) True XLOC_002923
TCONS_00005410 other upstream 542730 36163179 ~ 36163294 (-) True XLOC_002926
TCONS_00005427 other upstream 867169 36487618 ~ 36502331 (-) True XLOC_002940
TCONS_00005438 other upstream 1061203 36681652 ~ 36682514 (-) True XLOC_002946
TCONS_00005456 other upstream 1732031 37352480 ~ 37357303 (-) True XLOC_002957