RNA id: XM_021583889.2


Basic Information

Item Value
RNA id XM_021583889.2
length 3772
RNA type mRNA
GC content 0.45
exon number 16
gene id LOC110504973
representative False

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 30302588 ~ 30319039 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCCAAGAAGAATACCCCGTACTGTAGGTGGCGGCAatatggaatgtttttttttttttttcttattcaATACCCGGTCCAGCTGGTGACGGTAATGCACCATTaacattggatgccaaccgccgttaaaccccatcgaagaagaagaagaagtggcgGCGGCAATACACCAGTCGGTGTAGTCTGCCATAAAACtttgaaggagaagaagaagagcacGAGCACTCTTCAGGGTGTATAGTTCTTTCTTTCAATGTTTTATCAAGACAAGCAAGTTGAAAATGACCTTTGCCTTTCCTCTACGAATGAATGTTTTTATAGATGAAGACCTAGACTAAAACTTTGAATAGCTACCTGAATGGAAACTTAATAGTTGAATAAATGAGACTGACGTCTTGAAAAGATAGAACATGTACCTGTTGCGCTTCTCTATTGCCATCATTCTTGGGTTTGTGTGGTATTTATTTGACCGCGGACAAGTAGCGGCTCAAATTgctttatgtttactattttgGCAATCAACCCCAAATGTTTTAATAAAGACCAGACGGGAAAGCGGAACTCAGACAGACGATGTGGCTGAAGAACATTTATTCCAGGAAACCACCGACCATTTAGGTTGTGATGTGACTGATACAACAAGCACTAAAGCTGAAACATCACAGGAGAGACAGTTTCCCCATGTGAAGAGATCTCTTCAGCAAGTGTTTGACTGTGCCTACGCCCAGCTAGTCCTCCCCTGGTACAGCGTCCCTGGGCCCTGTGACAGTCAGCTCCTGCACCAGGTGCTGTGGAAGGAGTTTGACCAAGTCATCGATCAAGTCATCAGCAGAGGCAAAGACTTTGATGTCTGTGCTGCAAGTGTGGGCTGCATTCGCATCCTGACCCAGCACCTCCATAATGCCAAACAGTCTCATAGAAAACCATTGTTCCgctctagaggagaggaggttgaagTTCTCCGAGTGTTCTCTGAAGCACTGGTGCGAAACCTTTTACCCCAGTCCCTATGGGGACTGGCAGTCAGCCACTGTGCCTTAAATGAGATAGTTGCCTTAAAAGTACTGGACCTGCTGGTGCGTTGGCTCTCAGACCCTGACAACCTCAACCAGCTGGTGGTGAGTCAGCTGGATGGAGCGACCCGTAAAAGCTCTGTGGCGGATCTGTGTGAGTCCCACTCTGACAGGGCCTCTCCAGCCTCCCTGGAGAGCCAGGCCAGTGGAGCGACACAGGATGAAACAGAGGATGTGCAAACCAGTGACAGCAAGTCCAAAAAGAAAGCTAACAAATTGAAGGAAGGCTGGTCTAAATTCCTTGACAAGATGAGATTGAAGAATGCTAAAAGGGAGAAGATGAAGAAAAGGGAGCAGGCGCTGGTTGTCATGGCCATGTCTATCCAGGGTCGTCCATCAAACGAAACTGAAGGGAGTAGCCGGGAGGGCTCCATCCGGAACCAGCAGGACTCTGACAATGAGGACAGTGATCTGGAGAGCTACTGGAACAGTGTACAAGAGGATATGATGGAATTCAATCTGTCGTATGAGCTGTGGCGGGTTGGCCACTGGGCTGTCAGCGTCCCTTGTGTGGAGAGGGAAAACGAGGAACTGTGTTTTACAGTTCACCTGGAGGAGAGGGACAACCCTGAAAACCTTCACTGGAACGTGAGGAAGACCCAAACAGACATCATCCACTTCCGCAACCTATGGCAGGACTCTGCTACTTTACCCTCCCTATCCGTGTTAGAAGAGAGTACTGTGGTGAACATCAGTGAGGATTTTAAAGAAGCCAAAAAGTCAATCAAGCACTTCTTACAGGAGCTGGTGTCTGATGATCTAGTGGGCCACACTCAGCCAGTGTTTCAGTTTCTGTGTCCTCTGGACAAGCTGCTGGTTGAAGAGGATCATGTGGGGGAAGTGTGGGGCCTCTTCAGTGGCCTGGCCTACTTCCTGACTCCGGGCCAAGAGGAAGATGAGGACAAGCACAACAGCCTTGGAAGAGGGACCAAACCAGATGATTCCAACACAACGGAGGCTGCAGACCCAACTGCAACTGAGAACCTGGATGGCGATACAAGGGATGACCTGGCCCGGGGCCCATGTATCATCATCTCCCAATGTGATGAGGATTCTCCTCCAGAACCCAGTTCcattgagtgctgcagagatgacgAAACCGAACCAATAGAGAAATCTGACATTTTGGTTAATGCAGACAAAACCGAGGGATCTGAGAACCCCATAACTTCTCACCTAAAGATGGCAATCAAAAGGCTATCTAGATCAGAGGAGTGTCTGGCCCAAACAAAATCAGACACCCCTGAAGACCAGACTGACTCTTTCTGTAGACTGCGACGTTCCAGTGAAAATGGAAGCTTGCAATTTGACCTCGCTGTCAGTCCAACACATCCTTTTGGTGGAAAGTCGAATAAAAAGGAGAAGCTCACTTTCAAAATGTCAGGAGGGATGCCCAAGAGTAAAGGAAATGAAATGGGGAGTCAGCCAAAATTAGAAGACTCACCGTGTTTGAAAAAGGAACAATCCAGCTGGGAGCAAATGGAAGCAACCAAAGCcctttttgatttgttgaaagcAATATCTGGCAATTCCATCCTTCTGAACATATTTGATGCGATTTTGAAACCCGTCATGCCGATATTGAAAAAGAAAGTGAACAGCTTCTTGAATAATATGAACCCAACGGAAGCACAGATTGcctcctatatcgacaacctgcgTGAGAAACAGTGGCCCGGGGGCTTGCCGGAGGTGACATGCCCTATACCCCATCGCAGCAGTGAGGAGAAGCATGAAACCAAAGGCCGAGCTCACCATCTCATCAATGCCAGATATTCAAACTATTTAATCTTGAAGAAGACCGATATGGAGTCAGCATTTAAGCTCTTCCAGGACTGTGAAGAAAACAAGAAGCTGGTCTATATGCTGCTTTCATTCCTGTTGAGAGAGCTTCTGCCAGGTGAGGATGCCCTTAATGTGAGTGCCATAACCCTGCAGAAAGTGAACGTCAACTAACTCATTTTTAGATGTTCTCAGGTGAATCATGCTTTTAAATGATCTTTAGTTCAGTGAACTTTCGTTCTGATGTTTTAGAAAATGTTCATATTTATTTGATTGGTTGTCAGGCCTTACAACAGTCCCATTTAGTAGCATTTAATCCATATGTCTACACTTGATTGGAGTATTATAATAAATACATCTTTATGATACATTTCCAGGAAAACATATTTTACCTCATGCATTAAACATGCTGTGAATCATGCCTATTATTTAAAATGTATCATATGTTGACTATGAAATAAGTTGATCTTGATTATGTATTTAGCAACATGGGCAAATAATGTGTGGTATAAAAATGTGTGGTTATTCAGGTTCAAATGTCCTTTACCAGTGTAGAAAATGTCAATATTTGCTATCGAGATGGTAACAATGTACTCCATTGTCAAACTCAGAGGGACCATAAATGCACTTTTATTTCGAAAAACTTTACTGGTAGGGACAAACAGAGCACTGTGAATAAAATGTTAACATTTTGTCCAAAACGTTTATAATCACGTTCAGAGTTGATGGGGAGATGTGTTAAATGACCAGAATCATTTGACTGAAGTTGTTCATATTGTGTTTGGTTTGGAGAATAGCCAGTAATTACACATGTGATCTAGGTTTTACCATGGCTTCCGAAGCAACTGAATGTGATGTTTTCGGTGTCGATGTGCCTTCTTAATAAAGTTATTTACATTTTTCTTGCTTTTTTGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2597116 lncRNA upstream 38692 30263545 ~ 30263896 (+) True G2270407
TU2597093 lncRNA upstream 70604 30231773 ~ 30231984 (+) True G2270388
TU2597087 lncRNA upstream 86384 30215906 ~ 30216204 (+) True G2270382
TU2597079 lncRNA upstream 90241 30212137 ~ 30212347 (+) True G2270374
TU2597069 lncRNA upstream 93962 30208386 ~ 30208626 (+) True G2270364
TU2597130 lncRNA downstream 2925 30321964 ~ 30383010 (+) True LOC110504976
TU2597189 lncRNA downstream 63574 30382613 ~ 30427407 (+) True G2270478
TU2597275 lncRNA downstream 205629 30524668 ~ 30524958 (+) True G2270553
TU2597279 lncRNA downstream 213862 30532901 ~ 30533121 (+) True G2270557
TU2597296 lncRNA downstream 223741 30542780 ~ 30543017 (+) True G2270573
XM_021583888.2 mRNA upstream 16121 30283699 ~ 30286467 (+) True LOC110504971
XM_021583887.2 mRNA upstream 20141 30272277 ~ 30282447 (+) False LOC110504970
XM_036969605.1 mRNA upstream 20141 30272277 ~ 30282447 (+) True LOC110504970
XM_021583882.2 mRNA upstream 72400 30224958 ~ 30230188 (+) True LOC110504968
XM_021583883.2 mRNA upstream 74433 30224956 ~ 30228155 (+) False LOC110504968
XM_036969772.1 mRNA downstream 2784 30321823 ~ 30383240 (+) False LOC110504976
XM_021583900.2 mRNA downstream 157643 30476682 ~ 30479893 (+) True LOC110504981
XM_036969839.1 mRNA downstream 169525 30488564 ~ 30496448 (+) False LOC110504982
XM_021583901.2 mRNA downstream 169703 30488742 ~ 30496448 (+) False LOC110504982
XM_021583902.2 mRNA downstream 169710 30488749 ~ 30496448 (+) False LOC110504982
TU2594947 other upstream 1404509 28896755 ~ 28898079 (+) True G2268400
TU2594875 other upstream 1534859 28766877 ~ 28767729 (+) True G2268340
TU2593017 other upstream 3366699 26934720 ~ 26935889 (+) True G2266826
TU2592839 other upstream 3681640 26591266 ~ 26620948 (+) True G2266668
TU2592687 other upstream 3930105 26361992 ~ 26372483 (+) True LOC110504416
TU2597789 other downstream 857851 31176890 ~ 31181107 (+) True G2271027
TU2599828 other downstream 2544397 32863436 ~ 32863779 (+) False G2272912
TU2600208 other downstream 3097051 33416090 ~ 33421685 (+) True LOC110505056
TU2601118 other downstream 3883044 34202083 ~ 34207415 (+) True LOC110505080
TU2601139 other downstream 3912956 34231995 ~ 34232604 (+) True G2274048

Expression Profile