RNA id: XM_021583901.2


Basic Information

Item Value
RNA id XM_021583901.2
length 1653
RNA type mRNA
GC content 0.45
exon number 9
gene id LOC110504982
representative False

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 30488564 ~ 30496448 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTAATAGCTAAGGTAAAGTAAAAGAGGCGGGTTCTAGGAAGCACCATAGGACACGTAGGTGTTTACAATGGACCTTCCACATCATGGCTACCGAGCAAGTGCAAAGCCAAGAGCCCGTGCAGCTCCCCCCGCCGGGGACCCTCTCCTCTTTGACGATACCAGTTCGGCAGCACCACCAATGAACAGTCAGGGTTTCTACACCCCTGGGTACAACATGGGAGGGGCTCCAGCTGGAGGGCCAGGAGGTGCTGGGGTTAACAACCTGTTTGCTGACCCAATGGCCAGTGCAGCCATGATATATGGCTCTTCCCTGGCCAACCAGGGAAAGGATATTGTCAACAAGGAGATCAGCAGGTACGTGTCTGTGAACAAGCTGAAGTATTTCTTTGCCGTCGACAGCAAATATGTAATGAAGAAACTTCTGCTCCTCATGTTCCCATACACACACCAGGACTGGGAAGTTCGTTACCACAGAGACACTCCTCTTACACCCAGGCATGACGTGAATGCACCCGACCTTTACATACCTTCAATGGCTTTCATCACCTACATTTTGCTTGCTGGGATGGCCCTTGGCATTCAGAACAGGTTCAGTCCAGAGGTCCTTGGTCTGTGTGCCAGCACTGCTTTGGTGTGGGTCGTTATAGAGGTCTTGGTCATGTTGTTGAGTCTCTACCTTCTCACGGTTCACTCTGACCTATCCACGTTTGACCTCATTGCCTACAGTGGATACAAATATGTGGGGATGATTTTCACAGTGCTGGGTGGTCTGCTGTTTGGCAGTGATGGTTACTTCGTGGCTCTCGCCTGGTCATCGTGTGCTCTTATGTTTTTCATTGTCCGTTCTCTCAAAATGAAGATTCTGTCGTCTCTCTCCCATGACTCCATGGGGGCTGGGGCGAGTGCCAAACCAAGACTCCGCCTGTACATCACCGTGGCCACCGCCGCCTTTCAGCCAATCATTATCTACTGGCTCACCTCACATCTGGTCAGGTGACCTGATATGGGGTCTGATGCGGAGGTCCTTTGGTATCgaactttaaaaataaaaataaaatttaaaaaaaaaacgtaaaaaaCACTGATGCTTTCTACAAATTTGGTTCTTCTGAGTGTCACTGTTACCTGCCTTTCAGCTCATCTGCCAGAGAAAAGGGGATACTAGATATCGAGCTGTATCTTGTGTTCAGCTTGTGGGTTAGTTTtaaatgaacatttatttttgaCTCCTCTACAGTGTGAGACTTTTGTATGCAAGATGCATCGCTTGTCAAAAtggaaggcttttatgttttctCACCATGAGTGTTTTACTGAGTCCTTTTTGGCCCTCTTATTTATAGAGAAAGAAGGGTTTTGTATTCATGAAATTGGAATATGATTATGAGAAACATTTCACACCACACTCCAGTTTTCCTCTAAAGTTTCCTGTGTATATTGTCCATTTGGGCTTACCAGAAATGTTGCAGTATGGTTAAATGTAAAATGATGGAGCTACTCTGAGGATGTGCTACCAGTGCACTCTTATCTTCCCCATTTGTCCTTCCCTGTTAAACCCTCCTTTATTATGTATCTAAACTTTATAGAGCATGAACAACAATCAGTGTTATGTTTTTTgtagaaaaataaacatatttagcTTTGAATTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2597189 lncRNA upstream 61335 30382613 ~ 30427407 (+) True G2270478
TU2597130 lncRNA upstream 105732 30321964 ~ 30383010 (+) True LOC110504976
TU2597116 lncRNA upstream 224846 30263545 ~ 30263896 (+) True G2270407
TU2597093 lncRNA upstream 256758 30231773 ~ 30231984 (+) True G2270388
TU2597087 lncRNA upstream 272538 30215906 ~ 30216204 (+) True G2270382
TU2597275 lncRNA downstream 28220 30524668 ~ 30524958 (+) True G2270553
TU2597279 lncRNA downstream 36453 30532901 ~ 30533121 (+) True G2270557
TU2597296 lncRNA downstream 46332 30542780 ~ 30543017 (+) True G2270573
TU2597295 lncRNA downstream 79060 30575508 ~ 30577126 (+) True G2270572
TU2597283 lncRNA downstream 103656 30600104 ~ 30601219 (+) False LOC110504990
XM_021583900.2 mRNA upstream 8849 30476682 ~ 30479893 (+) True LOC110504981
XM_036969772.1 mRNA upstream 105502 30321823 ~ 30383240 (+) False LOC110504976
XM_021583889.2 mRNA upstream 169703 30302588 ~ 30319039 (+) False LOC110504973
XM_036969771.1 mRNA upstream 169703 30303897 ~ 30319039 (+) True LOC110504973
XM_021583888.2 mRNA upstream 202275 30283699 ~ 30286467 (+) True LOC110504971
XM_021583906.2 mRNA downstream 184 30496632 ~ 30500159 (+) False LOC110504984
XM_021583904.2 mRNA downstream 187 30496635 ~ 30500159 (+) False LOC110504984
XM_021583905.2 mRNA downstream 190 30496638 ~ 30500159 (+) False LOC110504984
XM_036969837.1 mRNA downstream 489 30496937 ~ 30500159 (+) True LOC110504984
XM_036970010.1 mRNA downstream 5621 30502069 ~ 30516383 (+) False LOC110504985
TU2594947 other upstream 1590663 28896755 ~ 28898079 (+) True G2268400
TU2594875 other upstream 1721013 28766877 ~ 28767729 (+) True G2268340
TU2593017 other upstream 3552853 26934720 ~ 26935889 (+) True G2266826
TU2592839 other upstream 3867794 26591266 ~ 26620948 (+) True G2266668
TU2592687 other upstream 4116259 26361992 ~ 26372483 (+) True LOC110504416
TU2597789 other downstream 680442 31176890 ~ 31181107 (+) True G2271027
TU2599828 other downstream 2366988 32863436 ~ 32863779 (+) False G2272912
TU2600208 other downstream 2919642 33416090 ~ 33421685 (+) True LOC110505056
TU2601118 other downstream 3705635 34202083 ~ 34207415 (+) True LOC110505080
TU2601139 other downstream 3735547 34231995 ~ 34232604 (+) True G2274048

Expression Profile