RNA id: XM_021583905.2


Basic Information

Item Value
RNA id XM_021583905.2
length 1988
RNA type mRNA
GC content 0.45
exon number 5
gene id LOC110504984
representative False

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 30496632 ~ 30500159 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAACCTGCAAAGCGTCCTTTTGGTTTCCAAGGGAACACTGGAACGGATAGAAGGCAGACGGGCAGGAATTCGATTCTTCGTATGGATATCAGACAATATTTTAAACTTTTGAATAATATATTTTGCATAATTCGAGACTTACCGATATACCCTGAACTAATACGTTGCTTTATTGATCATCTATTGAATGAGTGTTTAAGAAGTCTgctgggagagagatggagagtgacacTCACACACTGCCACCCCTTCCTACATCTCTTCTTTATCCCACCACTCTCTACCAGTCCCcacctttctcctctcttctgcagACTTCTTCCACTGTCCATGTttcactccctctgtctcctctgtcgaTTCCACCATGCCCTACTTGGCTTTCCCCCACAGCCCCAGTTTCCATTCACCTCAAGActgaatctctctcccctcttttagACTCCCTGTCCCCCCCTCAGTTCCTTGACGGACAAAACTTACACTGCCTCAACTCTCCAACCACATCTGACCAAGATGACTTGACCTGCCTCAACTGGTTACATCAAAGAGGCAATTTGCTTCCCCTGCAGCCCTTGCCCAAAACAACACCACTGCCCCAGCTGGAGCCCCAGGATCCCATACCTACCCAAAACCACCTTTCCTCCCCATCCAAGCCCCCTTACTCCTTCAGCAGTCTAATCTTCATGGCGATAGAATACTCGCCAGACAAGAGGCTCCCAGTGAAGGGTATCTATGACTGGATATTGAACAGCTTCCCCTACTACAGAGCAGCACCTGGGGGGTGGAGAAACTCTGTTCGGCACAACCTGTCCCTGAGTAAGAGCTTCTGTCGGATTCACAGGGACAAGAACCAGTCTGTGGGGAAGGGCTCACTGTGGTGCGTGTGTCCAGAATATCGATCCGCTCTTCTGGAGGTGCTTAGGAAGACCCAGTATTACCATAGCACTAACAGCAACTTACTAAACAACCCTGCATTGTTGGAGGGAGCTGATTATGGAGAATCTATGGTGTGTGACACTGTGGCGATCTCAGcctTGACCTCAGacaacccacctctctcctcaaATCCACCTTGCCCTCTGACCCCTGACCATGAGGAGCTTGTCAATATGGAGGCAGTGGAATATGAGGAAGAGGTTGGTGAGGAGATGGAGAAAGACCCCCTGTCAGACAGCGGCTACATAGAGTTCCATTACTACCAGTATCATCAGTACCAGTATCTGGTCCTGCCCGGGGACACTGAACTAGATCTGGAGACTGTAGAGATCCTGCAGCTGGATGCTGAGGCCCAAGAGGCTGCTGGGTCACTTCTGGACCTGGCAGGGGGTGGACATTAGACTGATCTACAGATAATGACATGCAGTGGGGTCTAAACAAAATGACCGGCCTACACTGTGATGCAAGGAGATTATGTGCAACCTGAGTGATAGAAATTGACAATTTGCTGCTGTGTGTTGACACTGCCTGAGATTTGATTTGCTGTCATGAAGTGATATAGCTACTATGATTGCAAATCCAAGCCACCCAACCTGATGCACTGAATCACATTAAGCCACTCACCACATTAATTGACATAAACCAAATCTTGGCATATGCTTTTGGTACAAATGAGGGAGAAAAAAGATTGATGCTGTACCGATATGATGATACGAAGAATCAAGACCTCTGTATTTTGATGGAATACTTCCGATGAATGATAACATGAGAAATCTACTGCCAGTTAATCCACTCTCAGATTCAGGGAACAAAGAAAGTTATGTTTAATCCTCCCGAATCTTTGTCTGTTCATGattaacatattttttttatgttttagatTTTATAATCTCTTTACCAGGGGCAGCATTTATTAAACACGTGTTCTTGCGGAGAATATATTTTATAGGCTGTCTGATTTGTTTGTTTAGAAAGAAACCTTAGACTTCTCAATCCATCTATTTTTCACTTCTCAATTTAACAATAAAGCACAAAACTCTTTTAAAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2597189 lncRNA upstream 69231 30382613 ~ 30427407 (+) True G2270478
TU2597130 lncRNA upstream 113628 30321964 ~ 30383010 (+) True LOC110504976
TU2597116 lncRNA upstream 232742 30263545 ~ 30263896 (+) True G2270407
TU2597093 lncRNA upstream 264654 30231773 ~ 30231984 (+) True G2270388
TU2597087 lncRNA upstream 280434 30215906 ~ 30216204 (+) True G2270382
TU2597275 lncRNA downstream 24509 30524668 ~ 30524958 (+) True G2270553
TU2597279 lncRNA downstream 32742 30532901 ~ 30533121 (+) True G2270557
TU2597296 lncRNA downstream 42621 30542780 ~ 30543017 (+) True G2270573
TU2597295 lncRNA downstream 75349 30575508 ~ 30577126 (+) True G2270572
TU2597283 lncRNA downstream 99945 30600104 ~ 30601219 (+) False LOC110504990
XM_036969839.1 mRNA upstream 190 30488564 ~ 30496448 (+) False LOC110504982
XM_021583901.2 mRNA upstream 190 30488742 ~ 30496448 (+) False LOC110504982
XM_021583902.2 mRNA upstream 190 30488749 ~ 30496448 (+) False LOC110504982
XM_021583903.2 mRNA upstream 190 30488824 ~ 30496448 (+) True LOC110504982
XM_021583900.2 mRNA upstream 16745 30476682 ~ 30479893 (+) True LOC110504981
XM_036970010.1 mRNA downstream 1910 30502069 ~ 30516383 (+) False LOC110504985
XM_021583907.2 mRNA downstream 2084 30502243 ~ 30516383 (+) True LOC110504985
XM_021583910.2 mRNA downstream 17172 30517331 ~ 30524440 (+) True LOC110504986
XM_021583914.2 mRNA downstream 99870 30600029 ~ 30611248 (+) False LOC110504990
XR_005041247.1 mRNA downstream 99870 30600029 ~ 30611248 (+) False LOC110504990
TU2594947 other upstream 1598559 28896755 ~ 28898079 (+) True G2268400
TU2594875 other upstream 1728909 28766877 ~ 28767729 (+) True G2268340
TU2593017 other upstream 3560749 26934720 ~ 26935889 (+) True G2266826
TU2592839 other upstream 3875690 26591266 ~ 26620948 (+) True G2266668
TU2592687 other upstream 4124155 26361992 ~ 26372483 (+) True LOC110504416
TU2597789 other downstream 676731 31176890 ~ 31181107 (+) True G2271027
TU2599828 other downstream 2363277 32863436 ~ 32863779 (+) False G2272912
TU2600208 other downstream 2915931 33416090 ~ 33421685 (+) True LOC110505056
TU2601118 other downstream 3701924 34202083 ~ 34207415 (+) True LOC110505080
TU2601139 other downstream 3731836 34231995 ~ 34232604 (+) True G2274048

Expression Profile