RNA id: XM_021583907.2


Basic Information

Item Value
RNA id XM_021583907.2
length 3170
RNA type mRNA
GC content 0.46
exon number 14
gene id LOC110504985
representative True

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 30502069 ~ 30516383 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCATGGCATTGACAAAACCACAAGCCCTACAGGTCAATTCGACTGCGGACGCGGAAGTGAATGAATTCGTAGTTTGAAAAAGTTTTCATGACAGCAGTATTGTTAATTTTCTGACTCATTGCTTGTGCCTGTGAATTCCTCATTCGGGATACCAAAGGGAACGATGGGGAGTGAGCCAGGCCCAGTCCAGATTGTGACAGTTTGCAAGGAGGATCACTCCTTTGCCTTGGACACAGAGGCTCTGGGACGGGTTCTGCTGGCACCGGAGGTCCGGGACAAACATGTGGTGGTGCTCTCAGTGGCTGGGGCCTTCCGGAAAGGCAAGAGCTTCATTCTGGACTTCATGCTCCGCTACATGTACAGGAAGAAGCATGGTGAGGAATGGCTGGGCCAGGACGATGAGCCCCTGACTGGGTTCAAATGGAGGGGGGGCTCAGAGCCAGAGACCACCGGCATCCAGCTGTGGAGTGAGGTCTTCCTGGTGGAGAAGAGTGATGGAACAGAGGTGGCAGTATTACTGATGGACACCCAGGGTGCATTTGATAACCAGTCAACCGTGAAGGATTGTGCCACAATCTTTGCCCTCAGCACCATGACCAGCTCAATACAGATCTACAACCTCTCACAGAACATTCAGGAAGATGATCTGCAGCAGTTGCAGCTATTCACAGAGTATGGTCGCCTCGCCATGGATGAAATCTATCTGAAGCCCTTTCAGTCTCTGATGTTCCTAATCAGGGATTGGAGCTTTCCTTATGAGTATAAATATGGGCTCAACGGAGGCAGAGAGTTCCTGGATAAACGTCTACAGGTGAAGGAGACCCAGCATGAGGAACTACAGACAGTGAGGGAACACATTCATTCCTGCTTCACCTCCATCAACTGTTTCCTGCTACCACATCCTGGGTTGAAGGTGGCCACCAGCCCCGCTTTCAAAGGCCAGCTTAGTGATGTGGCTCCCGAGTTTAAAAAGGAGCTTCGCAACCTCATCGCCACACTGCTGCACCCTAACTGCCTGGCTGAGAAAGAGATCAACGGCAACAAAGTCACCTGCAGGGGCCTGCTGGAGTTCTTCAAGGCATACATCAAGATCTACCAAGGTGAAGACTTGCCACACCCGAAGTCTATGCTGCAGGCCACAGCAGAGGCCAACAACTTGGCAGCCGTGGCAGGAGCCAAAGACCAGTATTACAAGAACATGGAGAAGGTTTGTGGGGGAGACCTTCCCTATGTGGCTCCTGCCTCTCTGGAGGAGAAGCACCACTTCTTCCTCCAGGAGTCCCTCCATGTCTTCTCCTCCACAAAGAAGATGGGAGGGCAGGAGTTCTGCGACCGCTACCGAGACCAGCTTGAGGCCGAGCTGGTAGAACTGTGGCAGTCTTTCACCAAGCACAATGAGTCAAAGAATGTCTTCAGTGCTTTCCGGACGCCCGCAGTGCTTTTTGTCCTTGTGTGCTTCCTGTACGTGCTGTCAGGGCTGTTGCTCTTCATCGGGCTGGCTACAATTGCTTTGATATGTGACTGTGTCTTGGGCCTGGCCATGGTCGCCATGCTCACCTGGAGCTTCATACGCTATTCGGGAAAATACCGGGGGCTGGGGGGAGCCATCGACCAGACAGCAGATGTCATACTGCAGCAGGCCACTGTGGTATTGAACAAGTCGAGGCCAGCGGTGGCTGAGATGAGGAAATCCAGCTAGATGGCCTTGACCCTATTTATCTTAATGCAATACAACATGCACACAACACAAGCACACATCCCAGCACTAAAGCCTTACCATGCTACCCAATGGAACCAACATATGATTATAATGGCAGTGGGAGGTCAACATGATGCACATTCACCAGCATCTTTTCAATCGCACAATTTTACACTACATACAAAGGTTATATCAGTGTCTATCTAGATAAAGATTAGACTACAGTCTTACAGAGTATCTGGGGCAAGGTGCATTCTGAGACCCATGGGGTTGTTTATTCCCCTGGACCTGTTTTTAACATTGACTGACACTGCCATTCTCACACACTTCCCCTCATTTATATAGACAACCCAGTGATGTTTACGTAGAAACACTAGACCCAAGTATTGTATTATTGGACATGCCATGGATTTGAATGCATCATAATCTACGTATCCTTTCTGACCAATGCTTAGTAATAGGATGCTGGCCAGGGTGGTTTTAAGTCATGTTAGACTTAAGCAGTGTATCCTCCTGATGCAATTTACCTATGCTATGCTGTGCTGTAATGGGGTATACCAGTTATACATGTAGCCAGATCTTTTTGACTTAATGCTGGTCTCTTTATACCGCTCTGTGGCCTTGTGCACATTCCTTCCCATTCCCAGTTTTGCATTATGCACCTTATTTGCATCCCCTTTATCCATGTCAGAGATTCCTTGTactgctttctcttctttcttGATACCAAGATTGGTGACTCTAAAACACAAGCCCACTTTAGAGGCAGTGCAAGTGCTGATGCATTCCACTGTTATCTTTTAATTTTTAGACTGCTTCACTGCTTGTAACTTGACCAAAATGTTGTACGGTTCTGAACTTGGAAGGTTGGTTAAGAGATGTTAGTTGCACTTACTTGAGAAATAAATGCTCCAAAGATGTTATATGTAAGATTTTTCAATACAGATGATTGCTTGAAAGGAGATTGTGATCATTTCGAATTTATGGGAACCGTTTTCTTAACTGTTTTGTGTGTAAGCAGGTGATGGGTATTGTGAGGCGGTTCAGTGACCTGTCAGCCAAAGAACTACTTATAAACATAGGGGTACAATAAAAGGCAAGAGACCTCTTCCTCAGAATCCAGATAAATCAACATAGTTCTAGAAGTTCCATTGGCTCTGACATTCCTTTTGCACATTCCATATCTATGTTCCATTCCATTGTTGAGGAGGCTACTATTGGAGGGATTTTTCCGCAATTACTATTGCACTCGCCCTCCTCTCTGTACAATTTACATTTGAACTCATtccacaaataaaaaatatattacagTAGATGCATGAAATtcatgttttttaaaaaaaattaatttcttccttttTGTTTTAATCATCTTTTGCAATGGTATTTTGTTGGGTCTTGGTTACTGAAATGTTTAAATTTTTTAAGAAAGTCATGCTTAAGCCAAATAAAATGCATAAGACCTGTGTAA

Function

GO:

id name namespace
GO:0006184 obsolete GTP catabolic process biological_process
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K17339 ATL; atlastin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2597189 lncRNA upstream 74836 30382613 ~ 30427407 (+) True G2270478
TU2597130 lncRNA upstream 119233 30321964 ~ 30383010 (+) True LOC110504976
TU2597116 lncRNA upstream 238347 30263545 ~ 30263896 (+) True G2270407
TU2597093 lncRNA upstream 270259 30231773 ~ 30231984 (+) True G2270388
TU2597087 lncRNA upstream 286039 30215906 ~ 30216204 (+) True G2270382
TU2597275 lncRNA downstream 8285 30524668 ~ 30524958 (+) True G2270553
TU2597279 lncRNA downstream 16518 30532901 ~ 30533121 (+) True G2270557
TU2597296 lncRNA downstream 26397 30542780 ~ 30543017 (+) True G2270573
TU2597295 lncRNA downstream 59125 30575508 ~ 30577126 (+) True G2270572
TU2597283 lncRNA downstream 83721 30600104 ~ 30601219 (+) False LOC110504990
XM_021583906.2 mRNA upstream 2084 30496632 ~ 30500159 (+) False LOC110504984
XM_021583904.2 mRNA upstream 2084 30496635 ~ 30500159 (+) False LOC110504984
XM_021583905.2 mRNA upstream 2084 30496638 ~ 30500159 (+) False LOC110504984
XM_036969837.1 mRNA upstream 2084 30496937 ~ 30500159 (+) True LOC110504984
XM_021583903.2 mRNA upstream 5795 30488824 ~ 30496448 (+) True LOC110504982
XM_021583910.2 mRNA downstream 948 30517331 ~ 30524440 (+) True LOC110504986
XM_021583914.2 mRNA downstream 83646 30600029 ~ 30611248 (+) False LOC110504990
XR_005041247.1 mRNA downstream 83646 30600029 ~ 30611248 (+) False LOC110504990
trnaa-agc-11 mRNA downstream 136296 30652679 ~ 30652751 (+) False trnaa-agc-11
trnaa-agc-12 mRNA downstream 137588 30653971 ~ 30654043 (+) True trnaa-agc-12
TU2594947 other upstream 1604164 28896755 ~ 28898079 (+) True G2268400
TU2594875 other upstream 1734514 28766877 ~ 28767729 (+) True G2268340
TU2593017 other upstream 3566354 26934720 ~ 26935889 (+) True G2266826
TU2592839 other upstream 3881295 26591266 ~ 26620948 (+) True G2266668
TU2592687 other upstream 4129760 26361992 ~ 26372483 (+) True LOC110504416
TU2597789 other downstream 660507 31176890 ~ 31181107 (+) True G2271027
TU2599828 other downstream 2347053 32863436 ~ 32863779 (+) False G2272912
TU2600208 other downstream 2899707 33416090 ~ 33421685 (+) True LOC110505056
TU2601118 other downstream 3685700 34202083 ~ 34207415 (+) True LOC110505080
TU2601139 other downstream 3715612 34231995 ~ 34232604 (+) True G2274048

Expression Profile