RNA id: trnaa-agc-12


Basic Information

Item Value
RNA id trnaa-agc-12
length 73
RNA type mRNA
GC content 0.58
exon number 1
gene id trnaa-agc-12
representative True

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 30653971 ~ 30654043 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gggggattagctcaaatggtagagcgctcgcttagcatgcgagaggtagcgggatcgatgcccgcatcctcca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2597324 lncRNA upstream 15234 30635516 ~ 30638737 (+) True G2270601
TU2597323 lncRNA upstream 19200 30634503 ~ 30634771 (+) True G2270600
TU2597321 lncRNA upstream 22605 30630994 ~ 30631366 (+) True G2270598
TU2597320 lncRNA upstream 24001 30629695 ~ 30629970 (+) True G2270597
TU2597282 lncRNA upstream 45609 30606311 ~ 30608362 (+) True LOC110504990
TU2597672 lncRNA downstream 295653 30949696 ~ 30950415 (+) True trnaa-agc-199
TU2597673 lncRNA downstream 296406 30950449 ~ 30950994 (+) True G2270914
TU2597675 lncRNA downstream 297458 30951501 ~ 30951752 (+) True G2270916
TU2597680 lncRNA downstream 312267 30966310 ~ 30966549 (+) True G2270921
TU2597681 lncRNA downstream 313799 30967842 ~ 30968222 (+) True G2270922
trnaa-agc-11 mRNA upstream 1220 30652679 ~ 30652751 (+) False trnaa-agc-11
XM_021583914.2 mRNA upstream 42723 30600029 ~ 30611248 (+) False LOC110504990
XR_005041247.1 mRNA upstream 42723 30600029 ~ 30611248 (+) False LOC110504990
XM_021583910.2 mRNA upstream 129531 30517331 ~ 30524440 (+) True LOC110504986
XM_036970010.1 mRNA upstream 137588 30502069 ~ 30516383 (+) False LOC110504985
trnaa-agc-13 mRNA downstream 240 30654283 ~ 30654355 (+) True trnaa-agc-13
trnaa-agc-14 mRNA downstream 2345 30656388 ~ 30656460 (+) True trnaa-agc-14
trnaa-agc-15 mRNA downstream 4431 30658474 ~ 30658546 (+) True trnaa-agc-15
trnaa-agc-16 mRNA downstream 6833 30660876 ~ 30660948 (+) True trnaa-agc-16
trnaa-agc-17 mRNA downstream 7457 30661500 ~ 30661572 (+) True trnaa-agc-17
TU2594947 other upstream 1755892 28896755 ~ 28898079 (+) True G2268400
TU2594875 other upstream 1886242 28766877 ~ 28767729 (+) True G2268340
TU2593017 other upstream 3718082 26934720 ~ 26935889 (+) True G2266826
TU2592839 other upstream 4033023 26591266 ~ 26620948 (+) True G2266668
TU2592687 other upstream 4281488 26361992 ~ 26372483 (+) True LOC110504416
TU2597789 other downstream 522847 31176890 ~ 31181107 (+) True G2271027
TU2599828 other downstream 2209393 32863436 ~ 32863779 (+) False G2272912
TU2600208 other downstream 2762047 33416090 ~ 33421685 (+) True LOC110505056
TU2601118 other downstream 3548040 34202083 ~ 34207415 (+) True LOC110505080
TU2601139 other downstream 3577952 34231995 ~ 34232604 (+) True G2274048