RNA id: TCONS_00005407


Basic Information

Item Value
RNA id TCONS_00005407
length 2110
lncRNA type inter_gene
GC content 0.31
exon number 2
gene id XLOC_002923
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 35650584 ~ 35654680 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ggagggaaagttgtagtttttttacccagacatttaaaaagaaaatattttagaacagtaatcacaatactgtgaaatcgtgatatttttatccaagattatcataccatcagaatcttataccagcccatgcctaattcCAGGTCTCctgaaaatgataataatttagaGATAATGTGTTCTAGTCATTGCTTTTAATGCATGATAGTCAGTGGTGTTTAtcatttctaaaatgtttttgctTCTTTTGCTGCTTAAATAGCCGACATTGTctgttttgtaattaattattcttagagatgttgtgtgtgtatgtgtgttcatcTCTGAATGATGCCCTAAGCCCTAAACAGTAAGAGTTTATGTGCTGAGGTTAAAAATTCAGCACATTGTCTCTTACTTGTAGGGAAAAGGGTTTCTATCGGCCTGTCACATTGTTTTCGCTTTGTTGTGGAAGATAGTCAACATGTGCATTGCAGAAAAACAAGCAATGTCATCAGTGTACAAATCTCAAGAATATTCAGCAAATGTTAAGAGTAAGCTTGAAATATCTTCGGACTTTATACCCAGGCTTTTGAATTAGACATTAAAATTGATGTGGAATTAGCATTGTTTGGATGTTCAGACCAGGCTTTAACTTAACATCAACAACTCTCCCTTATGTTTGGCATGGTGCTGTCCAAGAGAGTGATTCTAATGGAGTGGAAATCCATGACACCTTCAAGTAGCCCTAAAGCTTGGAAGCTTACATTTCTCTAGATTTGGCAAACAGAAGATGTATGGCAAAATATGGAGTCCTTTCCTTGGATATATATTATAATGTAGCTGtaactattattttttaatatatttttcttcttttcacATGTCATTTTCTTTTGTAACGGATTCCATTAGTCTGGAAACTGTATGGGGAAAAGGAGCAATCGCTGGCTCTCCGTATGAAGAATATGAATCACTGGGTCATCGGGGAACATATTGAATCATCAGGAAAACATTAGAAAGCACTGGTACGCTACATGAATTCATGACACAAGAAAGCAAGTCTGCATGTGTTGACTTAAGCTGTGATAAGAATAAAGTTAATTAATGATAATACATTAGAGTCATTGCATAAAATGAATCCCGTTTTTACTTGAGAAATAAACCAACATAAAAGTGCTGTAACTAGGCTATAATAAATGTGTGATTTCAAAACATTACATTATTGTTTTAtcaatgttgttttaaattagAGTCGATTAAATGTTATTTGAATCTTCGCATTCCTTTCCTTTTTACTTTTTTAGCTGAACTTTTAATTTGCAAGTTGAAGGCGGAATGATACAACAATTATAATAACATGTTGTTCGAACTCAGAAATAAACATTTAGGCAATGTTTTTGGCACAAGtgcctttttttaataaaatgtaaatgattttacCTGCTGTTACCCTcataaaaacacacttttttataataaactattatttagaaaagaagaaatgtacaatataaatcAGGAAGTAATCTTTAGAAGACTGGAATACAAGAATATACAATtacaaaatgataaaaacaataagtaacaaaaaaaagaagtaatagaaagaaaaaagaacaaaataaagaaaggggaagtacaaaattaaattaaataaaaaaaatacagaaatcatTAATTACTAACATACTGGAAGCATGATATTTTCATAAGTTTCTATTAACTTGCAGAATTTTTTGTTGCTAGATAGACGTATAGCTTTAAGCAAGGAAtcaattttagtttaaaaaatggGCACATGAGGGAGAGGGTTTAAGAAATTTTTGTTTGTGGATAAAGAATTTTgcatataatattaaaaacatttatttttatacttaattTTTACTCTTGGGACtagaataataacaaataatatctttACCCTCACAAAAACCCCATGTAAAACAGCCGTAAAAGTGACATCCCTTTTGTGCAGTTACATCATCACTCAACTACAAATAACACAAGTGCGTCACTATCTTCTAAATATCGTTGTTGATGTTGATTTAGGAGGTTGGACATAATGCTATCATTTTTAAATTACAACTAccgtacagttaaagtcagtattattagcccccct

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006091 lncRNA downstream 218929 35429504 ~ 35431655 (-) True XLOC_002919
TCONS_00005401 lncRNA downstream 328947 35312892 ~ 35321637 (-) True XLOC_002917
TCONS_00005392 lncRNA downstream 486293 35160010 ~ 35164291 (-) True XLOC_002912
TCONS_00006090 lncRNA downstream 592140 35054281 ~ 35058444 (-) True XLOC_002909
TCONS_00005382 lncRNA downstream 658156 34984618 ~ 34992428 (-) True XLOC_002907
TCONS_00006092 lncRNA upstream 157072 35811752 ~ 35964401 (-) False XLOC_002925
TCONS_00006094 lncRNA upstream 157072 35811752 ~ 36093493 (-) False XLOC_002925
TCONS_00006093 lncRNA upstream 157072 35811752 ~ 36093493 (-) False XLOC_002925
TCONS_00006096 lncRNA upstream 157072 35811752 ~ 36093533 (-) False XLOC_002925
TCONS_00006095 lncRNA upstream 157072 35811752 ~ 36093533 (-) True XLOC_002925
TCONS_00005405 mRNA downstream 36832 35584647 ~ 35613752 (-) True XLOC_002921
TCONS_00005404 mRNA downstream 108513 35537974 ~ 35542071 (-) True XLOC_002920
TCONS_00005402 mRNA downstream 240066 35367722 ~ 35410518 (-) False XLOC_002918
TCONS_00005398 mRNA downstream 393023 35250205 ~ 35257561 (-) False XLOC_002916
TCONS_00005400 mRNA downstream 393061 35255881 ~ 35257523 (-) True XLOC_002916
TCONS_00005409 mRNA upstream 9449 35664129 ~ 35668584 (-) True XLOC_002924
TCONS_00005411 mRNA upstream 550531 36205211 ~ 36207737 (-) True XLOC_002927
TCONS_00005412 mRNA upstream 557895 36212575 ~ 36214582 (-) True XLOC_002928
TCONS_00005413 mRNA upstream 562559 36217239 ~ 36220061 (-) True XLOC_002929
TCONS_00005414 mRNA upstream 566825 36221505 ~ 36223005 (-) True XLOC_002930
TCONS_00005406 other downstream 30135 35620333 ~ 35620449 (-) True XLOC_002922
TCONS_00005403 other downstream 263342 35369837 ~ 35387242 (-) True XLOC_002918
TCONS_00005381 other downstream 658170 34984618 ~ 34992414 (-) False XLOC_002907
TCONS_00005358 other downstream 1323190 34327262 ~ 34327394 (-) True XLOC_002902
TCONS_00005343 other downstream 1617163 34032283 ~ 34033421 (-) True XLOC_002893
TCONS_00005410 other upstream 508499 36163179 ~ 36163294 (-) True XLOC_002926
TCONS_00005427 other upstream 832938 36487618 ~ 36502331 (-) True XLOC_002940
TCONS_00005438 other upstream 1026972 36681652 ~ 36682514 (-) True XLOC_002946
TCONS_00005456 other upstream 1697800 37352480 ~ 37357303 (-) True XLOC_002957
TCONS_00005460 other upstream 2396972 38051652 ~ 38051766 (-) False XLOC_002962

Expression Profile

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