RNA id: TCONS_00006096


Basic Information

Item Value
RNA id TCONS_00006096
length 2607
lncRNA type read_through
GC content 0.41
exon number 5
gene id XLOC_002925
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 35811752 ~ 36093533 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCAAAACGTGATAGCAAACATGCATTTAAAGCAAATGTAACGCGATTTTAACCATGCCTAAATAAATAAGCAGGATAACACAACTCAGGATATAATAAATACGAAAATTATACATAGTAGATATGCCGTTTTTTCGTACCTTGGAGTAATGAAGCACTGCTGCGGGGTAATCCTTGACTTTGAAGCTGAGGTTGCCTTGCTGTCTAAACTCAGAAGCTGTTTCAGGAGACTTTTTGACGGAAAACTTCTCTGAGATTCTGGACAGAATGTTGAGATCCTCTGGACTGATATGGACAAATCCGAAAACCTAATGTGACATTTGAGCAAAAACAGCTCTATTCAACACCAGTGGAAAAGCATGCCCAATATGACAGCAGTCCATCTCTGATTGACCATCTCTTGAGGACAAAAGGGGCAGGTGACATTTCCACCCGTGCTGGCAGCTGCTGCCGGGCACACACTGACTGACAGCAGCTGTAATGGGCATTTCAAGGTGGCATTTTCCTTTCTGTCTCACCGGCTTAAGAGCGGAtaaaagaaaagagaagaaaTATGAAGAAAAGCAAGTTTATAAATGACGTGGCATCATGATGCTCACTGTTCGGCTTGCAGCCCATACACGCCATCAGCGGCAGTAATCTCTTCTTAACAGTAAGAAACTGTAATTAGAAAAGCCGATGTGACCAGCACTCTGAACTGAGGATCAGAGgacagagaggaaaaaaaaaacagcacatgaAAAGGAAGAACAAAGGCAGGAACAGAGAACAGCAGAGTGAGATGGACACCAGTAGAGTTTAAAGAGGAAAAGAGTCGAGGTAcaagaaaaaaagtgtgtgtgtgtgagtgtgtgtgtgagggggatATTTGAGAGACATGAGAAATGTGCTGGTAAGCTGTTTGTAAAGGTCTTCAGACGGAGGACCACGTCTCACTAAAGCAAGGACGCACGTCAAGGAGAAACACTTTTCGCTCTTGGCTTAAAGAGGAAGATGCCCTTCAAGATCCTGGAATTTataaagcacaaaaacacacacatgcatcatcACGCACAGACTACTGACTGATCTGAACAGGCTCAAAATAATGagaaagctgaaggaaaactaGCATAATCAGAAGACAGAGGACAGAGCTCTGGATCGCAGCCATCGTTGGGCAGGAGCGGTTAGCGAAGACTCTTCCGCTGAAGCTGGAATACGAGACGCTGCAGTGGCCCAGATTAGACGGGGAACAGGAGATGATGCATAACGAGCTCTCTTTAGAGGATAAACGTAGGGATGCATGTCTGCAGTCACCTCTGAGATGTCTAATGTTGTGTGCGGGTCAAAACATTGCAGCGTTCAAGGACACTGACCCTTCACTGAGCCTTCAGGGAGAGTTCaggcaaaaatgaacattttcattatGTATGCAGTTCTTTCTGAGGAAGACAGCACTTTTTGGAGCCTACTGACTACTGTTCTATAGACATAAACAGCTATGTATTGTAAAAAGCGGTTAGTGGACTTTACACTCTCGGAAAAATAGGTGCGAGAGCTGTTACTGGGGTGATACCTTTTCAAacgatacacatttgtacttaaagggtccatattggtacttggcatatacactcaccggccactttattaggtacacccgtccaactgtttgttaacgCAACTTTGGTGTAACGGGATATGATGGAACGGGAAATTTACAACGGGGTCCAACacagtattagtaaggtgtacctaataaagtggccggtgaatgtatttGTACCTAAAAATGTTAAAAGGTGCACTTGTACCACCAACATGTACCCTTGAGGCATTAATATGAACCCTTTAGATTAAAATgtgtaccttttcgaaaggtaccaccccagtgacagctctcgtaccctgatttctgagagtgtaaaaatgtgagtaaacaaTTTGAATAATAAACTGATTAGGTAAATGAAGTATGTGCATGAATataaaatttaagttaaattatcAGTTCCATGTCCGCGTTTACACACTTTCTTGGGTAAAGTCAACTTACTGAAGTTATAAGTAACCCACCATTGTATATTATATGAAACACTTGGTTTGCTTCAACCTAAGTTCCGCAGACAGTATCATtggtatttgtttcttttaaaatgtgtttactttAATCTCCCTTcttatttaaagcagttttttgttCCATTTACATCATCATATTCGCTTCGTCATGTGCAACAGAATTATTTTTTGGTTCCCAGAATTTCTACAGAAAGTGGCCGCAGGTCCTTTCAATACAAAGCACCTTCCGACTGGAACAATCtcccttctttttttaaatcaattaaatcactTCGTCTTTTCAGggcttatttattttctcttctggaaacAACTTGCGGATGTTATTAAATTTGGCtccaaattaaatgtttattatttatttgcatatcagATTGTTTGTACTTTTGATTATATGTTGTTGCTTATTTAGGCTTCGTATTgtgggaagtgtttcaggtggagtgtgctgcttgtttgatttttttgtttgtttgtcttgtcaAGTGTATGTACTTTATGATGTGTTGTACTCTGTTTGATTTGTGAACTTTTTAGGGACCCc

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005407 lncRNA downstream 157072 35650584 ~ 35654680 (-) False XLOC_002923
TCONS_00006091 lncRNA downstream 380097 35429504 ~ 35431655 (-) True XLOC_002919
TCONS_00005401 lncRNA downstream 490115 35312892 ~ 35321637 (-) True XLOC_002917
TCONS_00005392 lncRNA downstream 647461 35160010 ~ 35164291 (-) True XLOC_002912
TCONS_00006090 lncRNA downstream 753308 35054281 ~ 35058444 (-) True XLOC_002909
TCONS_00006097 lncRNA upstream 371810 36465343 ~ 36469895 (-) True XLOC_002939
TCONS_00006098 lncRNA upstream 501847 36595380 ~ 36610901 (-) True XLOC_002942
TCONS_00006099 lncRNA upstream 548633 36642166 ~ 36650904 (-) True XLOC_002944
TCONS_00005434 lncRNA upstream 560664 36654197 ~ 36662600 (-) False XLOC_002945
TCONS_00006100 lncRNA upstream 560664 36654197 ~ 36662611 (-) True XLOC_002945
TCONS_00005409 mRNA downstream 143168 35664129 ~ 35668584 (-) True XLOC_002924
TCONS_00005405 mRNA downstream 198000 35584647 ~ 35613752 (-) True XLOC_002921
TCONS_00005404 mRNA downstream 269681 35537974 ~ 35542071 (-) True XLOC_002920
TCONS_00005402 mRNA downstream 401234 35367722 ~ 35410518 (-) False XLOC_002918
TCONS_00005400 mRNA downstream 554229 35255881 ~ 35257523 (-) True XLOC_002916
TCONS_00005411 mRNA upstream 111678 36205211 ~ 36207737 (-) True XLOC_002927
TCONS_00005412 mRNA upstream 119042 36212575 ~ 36214582 (-) True XLOC_002928
TCONS_00005413 mRNA upstream 123706 36217239 ~ 36220061 (-) True XLOC_002929
TCONS_00005414 mRNA upstream 127972 36221505 ~ 36223005 (-) True XLOC_002930
TCONS_00005415 mRNA upstream 130937 36224470 ~ 36225729 (-) True XLOC_002931
TCONS_00005408 other downstream 157398 35654245 ~ 35654354 (-) True XLOC_002923
TCONS_00005406 other downstream 191303 35620333 ~ 35620449 (-) True XLOC_002922
TCONS_00005403 other downstream 424510 35369837 ~ 35387242 (-) True XLOC_002918
TCONS_00005381 other downstream 819338 34984618 ~ 34992414 (-) False XLOC_002907
TCONS_00005358 other downstream 1484358 34327262 ~ 34327394 (-) True XLOC_002902
TCONS_00005410 other upstream 69646 36163179 ~ 36163294 (-) True XLOC_002926
TCONS_00005427 other upstream 394085 36487618 ~ 36502331 (-) True XLOC_002940
TCONS_00005438 other upstream 588119 36681652 ~ 36682514 (-) True XLOC_002946
TCONS_00005456 other upstream 1258947 37352480 ~ 37357303 (-) True XLOC_002957
TCONS_00005460 other upstream 1958119 38051652 ~ 38051766 (-) False XLOC_002962

Expression Profile

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