RNA id: TCONS_00005411


Basic Information

Item Value
RNA id TCONS_00005411
length 1367
RNA type mRNA
GC content 0.35
exon number 2
gene id XLOC_002927
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 36205211 ~ 36207737 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTAAGTTTAAAACTGGGCAATCTTCCTTAGGTTTATTCTGTGAGTAAACCAAATTGATCCTTCATTAACTGTATTATTATGTAACCCTTTGTTTCTGCTTTTCTGCAAAGACTGGATggaaaaaataatttgaaaatgaGTCAAGACGTGTCTGGAAACAAGAACATTTCCTTTCAGCCTGCTGCACACTCTGGTAACACAACTGCCAACTTGACCACTGCAAGTGTGACCTATTTTCGTCCTGCAACATTCTTCATCAGTGGCTTTTCTAATCTCCCACATGCAAAATACTACTATGTGTTCTTgtgttttgtttactttgtgaCTGTTTTAGGAAATTCATTTATCATGTGTGTAATTTATATGTCTCGCAGACTTCACACAGCCAAATACATTGCTGTTTTTCATCTGGCTTTTTCTGATCTGTGTGGAAGCACAGCTGTGATTCCAAAACTTATAGACATGTTTTTATTTGGTCACCAGGAGATTTCGTATGAAGCATGCTTGATCAATAtgttttttgtatttcatttaatGAATTTACAATCTATGTCGCTACTCGTCTTAGCCTATGACAGACTGGTTGCTATTTGTTTTCCTCTAAAGTACCATGCAATCATTACAAAAAAATCTGTATCACTCATCTTAGGCAACATGTGGCttttttctatctttctttttGCTACACTTGCAGGTTTAGTCAACAGACTGTCTTTTTGTAGATCGACTGTAGTCAGTAGCCATTTCTGTGATCACGGGCCTGTTATCAGCCTTTCCTGTAATAGTAATTTTATAAATTATCTCATGGCATATATTTCGTTTGGTCTTCTGATTTGCATGCCGATGCTACTAATAACCATCTCATATTGTTGTATTGCTGCGGCTTTATTTAAGATCGCTCATGGCGCTGATCGAATCAAAGCTATGAAAACGTGCACCTCGCATCTCATGTTAGTGGCAATTTTGTATCTCCCGATTTTAAGTTTAAATATAAAATCCATTGCAATATCTATTGATCTTAACTCTCGGATAATTAACAATTCTCTAACGCAAATACTACCACCTATGCTGAATCCCATTATATACACTCTAAAGACAGAAGAGGTCATGCAGGCCATAAAAGAAATGTACCGACGCCGTCGAAAGGTGAACACTATGATGGAACAAAATGtgaaacagagaaaataaatattatcatttcACATTTTGCTGTTGAATGAAATGTCATGTCCTTTGTTATGTATAAATATCTGACAGTCTAAAGTTTAATgattacaaacattcaaatgaatAGGATTGGCTGTTCAGACATGATAAAATAATTGTGCAAATTTCCTATGTTATTAGAATTGGCAGTGACATCacat

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0050896 response to stimulus biological_process
GO:0007608 sensory perception of smell biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004984 olfactory receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070806-75 Predicted to enable odorant binding activity and olfactory receptor activity. Predicted to be involved in detection of chemical stimulus involved in sensory perception of smell. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDART00000159366

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006096 lncRNA downstream 111678 35811752 ~ 36093533 (-) False XLOC_002925
TCONS_00006095 lncRNA downstream 111678 35811752 ~ 36093533 (-) True XLOC_002925
TCONS_00006094 lncRNA downstream 111718 35811752 ~ 36093493 (-) False XLOC_002925
TCONS_00006093 lncRNA downstream 111718 35811752 ~ 36093493 (-) False XLOC_002925
TCONS_00006092 lncRNA downstream 240810 35811752 ~ 35964401 (-) False XLOC_002925
TCONS_00006097 lncRNA upstream 257606 36465343 ~ 36469895 (-) True XLOC_002939
TCONS_00006098 lncRNA upstream 387643 36595380 ~ 36610901 (-) True XLOC_002942
TCONS_00006099 lncRNA upstream 434429 36642166 ~ 36650904 (-) True XLOC_002944
TCONS_00005434 lncRNA upstream 446460 36654197 ~ 36662600 (-) False XLOC_002945
TCONS_00006100 lncRNA upstream 446460 36654197 ~ 36662611 (-) True XLOC_002945
TCONS_00005409 mRNA downstream 536627 35664129 ~ 35668584 (-) True XLOC_002924
TCONS_00005405 mRNA downstream 591459 35584647 ~ 35613752 (-) True XLOC_002921
TCONS_00005404 mRNA downstream 663140 35537974 ~ 35542071 (-) True XLOC_002920
TCONS_00005402 mRNA downstream 794693 35367722 ~ 35410518 (-) False XLOC_002918
TCONS_00005400 mRNA downstream 947688 35255881 ~ 35257523 (-) True XLOC_002916
TCONS_00005412 mRNA upstream 4838 36212575 ~ 36214582 (-) True XLOC_002928
TCONS_00005413 mRNA upstream 9502 36217239 ~ 36220061 (-) True XLOC_002929
TCONS_00005414 mRNA upstream 13768 36221505 ~ 36223005 (-) True XLOC_002930
TCONS_00005415 mRNA upstream 16733 36224470 ~ 36225729 (-) True XLOC_002931
TCONS_00005416 mRNA upstream 22865 36230602 ~ 36231741 (-) True XLOC_002932
TCONS_00005410 other downstream 41917 36163179 ~ 36163294 (-) True XLOC_002926
TCONS_00005408 other downstream 550857 35654245 ~ 35654354 (-) True XLOC_002923
TCONS_00005406 other downstream 584762 35620333 ~ 35620449 (-) True XLOC_002922
TCONS_00005403 other downstream 817969 35369837 ~ 35387242 (-) True XLOC_002918
TCONS_00005381 other downstream 1212797 34984618 ~ 34992414 (-) False XLOC_002907
TCONS_00005427 other upstream 279881 36487618 ~ 36502331 (-) True XLOC_002940
TCONS_00005438 other upstream 473915 36681652 ~ 36682514 (-) True XLOC_002946
TCONS_00005456 other upstream 1144743 37352480 ~ 37357303 (-) True XLOC_002957
TCONS_00005460 other upstream 1843915 38051652 ~ 38051766 (-) False XLOC_002962
TCONS_00005461 other upstream 1864340 38072077 ~ 38072168 (-) True XLOC_002963

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000304_17318429_17320775.mRNA True 1676 mRNA 0.38 3 CI01000304 17318424 ~ 17320898 (-)