RNA id: TCONS_00005414


Basic Information

Item Value
RNA id TCONS_00005414
length 1501
RNA type mRNA
GC content 0.35
exon number 1
gene id XLOC_002930
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 36221505 ~ 36223005 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGTGGAAGCTTCGCAGAAGGTAGAGACTGAACCATGTGTCCTTTTTCTCTCTATTTTACTGCAGTGACTTCTTGAATTATTTGTTTGGGTCACATCAGCAACTGgaaattaaatcattatttgaACATTCTGTTATTGAGAGCATTGCAGTTCTTTTCTCACAGGTTACAAAGACCCAGACAGCAGGTGTCATGAGCTCCATACAGACAAATCCTTCAGCAAATCTGACCTTTGTTCGTCCTGCAAAATTTTTCCTCAGTGGCCTTTCTAATGTTCCACATGCAAAATACTACTATGTGTTCTTGTCTTTAGCTTATGTTGTGACTGTTTTGGGGAATTCATTTCTCATGTGTATCATGTATTTGTCCCGCAGACTTCACACAGCTAAATACATTGCTGTTTTTCATCTGGCCCTCTCTGATCTGTGTGGAAGCTCAACTGTTATTCCAAAAGTCATTGATACACTTTTATTTGATCACCAGGACGTTTCATATGAAGCATGTTTGAcacatatgttttttatttaccatttcatgaatctgcAGTCTTTAACACTACTTGTCATGGCCTACGACAGGCTGGTTGCTATTTGTTTTCCTCTACGGTATCTAGCCATTGTGACCAAGCCGTCAATGTTTCTGATCGTAGGAGTGATGTGGattttttctgtgatatattttTCAGTGCTTGTAGGTTTGGTCAACAGAATCTCTTTTTGTGGATCTCGTGTGATAGACAGTTATTTTTGTGATCAAGGCATTATCTATAAACTTGCTTGTAATGATAATTCTATAAATCTAATGATGGGAAAAATTAGTTTTGGTCTCCTAATGTGCACACCTTTCATGCTGATTGTGATCTCATATTTTTTCATTGCTCTGGCTCTGCTTAAGATTTCTCATGGTGTTGACCGGATCAAAGCCATGAAAACCTGCACCTCACATCTCATGTTGGTGGCAATCGGGTATCTACCTTTGATAAGCAATCAAATTGCAGCGTTAACAACATCTATTGATCCAAACACTCGGATATTTAACAACTCTTTGAGACAGGTAATACCATCTATGCTGAATCCCATCATATACACTCTGAAGACAGAGGAGGTCATGGAATCCATAAAAGATCTGTACAAACGAAGAAAAATTAACACAGCTATAAAAAGAATTTGATGCAGCAGGAAAAATTTGAACTAATAACAACAAATTTAATGACACTTTCACACTGTTATAATTCAACTAATATCTAAAATAACAAacctgtgtgtttatgtgtatatgtatatgatactttattattttttactttattttataagcTTAGCTGCTAATAAAACAATGTAGCCTTTTAAAGAgcttacaattttttttccagCACACCATCATCTTATATAAGCATACACTAGAACAGTGAATTACAGTAaagaaataaatttatatatcactcgtcataaatttattttttaattactgttATTTTGTAAACCAAATTTCTTCAAGTAAC

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0050896 response to stimulus biological_process
GO:0007608 sensory perception of smell biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004984 olfactory receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070804-7 Predicted to enable odorant binding activity and olfactory receptor activity. Predicted to be involved in detection of chemical stimulus involved in sensory perception of smell. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in olfactory rosette.

Ensembl:

ensembl_id ENSDART00000159962

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006096 lncRNA downstream 127972 35811752 ~ 36093533 (-) False XLOC_002925
TCONS_00006095 lncRNA downstream 127972 35811752 ~ 36093533 (-) True XLOC_002925
TCONS_00006094 lncRNA downstream 128012 35811752 ~ 36093493 (-) False XLOC_002925
TCONS_00006093 lncRNA downstream 128012 35811752 ~ 36093493 (-) False XLOC_002925
TCONS_00006092 lncRNA downstream 257104 35811752 ~ 35964401 (-) False XLOC_002925
TCONS_00006097 lncRNA upstream 242338 36465343 ~ 36469895 (-) True XLOC_002939
TCONS_00006098 lncRNA upstream 372375 36595380 ~ 36610901 (-) True XLOC_002942
TCONS_00006099 lncRNA upstream 419161 36642166 ~ 36650904 (-) True XLOC_002944
TCONS_00005434 lncRNA upstream 431192 36654197 ~ 36662600 (-) False XLOC_002945
TCONS_00006100 lncRNA upstream 431192 36654197 ~ 36662611 (-) True XLOC_002945
TCONS_00005413 mRNA downstream 1444 36217239 ~ 36220061 (-) True XLOC_002929
TCONS_00005412 mRNA downstream 6923 36212575 ~ 36214582 (-) True XLOC_002928
TCONS_00005411 mRNA downstream 13768 36205211 ~ 36207737 (-) True XLOC_002927
TCONS_00005409 mRNA downstream 552921 35664129 ~ 35668584 (-) True XLOC_002924
TCONS_00005405 mRNA downstream 607753 35584647 ~ 35613752 (-) True XLOC_002921
TCONS_00005415 mRNA upstream 1465 36224470 ~ 36225729 (-) True XLOC_002931
TCONS_00005416 mRNA upstream 7597 36230602 ~ 36231741 (-) True XLOC_002932
TCONS_00005417 mRNA upstream 11980 36234985 ~ 36236610 (-) True XLOC_002933
TCONS_00005418 mRNA upstream 14976 36237981 ~ 36240806 (-) True XLOC_002934
TCONS_00005419 mRNA upstream 19886 36242891 ~ 36244864 (-) True XLOC_002935
TCONS_00005410 other downstream 58211 36163179 ~ 36163294 (-) True XLOC_002926
TCONS_00005408 other downstream 567151 35654245 ~ 35654354 (-) True XLOC_002923
TCONS_00005406 other downstream 601056 35620333 ~ 35620449 (-) True XLOC_002922
TCONS_00005403 other downstream 834263 35369837 ~ 35387242 (-) True XLOC_002918
TCONS_00005381 other downstream 1229091 34984618 ~ 34992414 (-) False XLOC_002907
TCONS_00005427 other upstream 264613 36487618 ~ 36502331 (-) True XLOC_002940
TCONS_00005438 other upstream 458647 36681652 ~ 36682514 (-) True XLOC_002946
TCONS_00005456 other upstream 1129475 37352480 ~ 37357303 (-) True XLOC_002957
TCONS_00005460 other upstream 1828647 38051652 ~ 38051766 (-) False XLOC_002962
TCONS_00005461 other upstream 1849072 38072077 ~ 38072168 (-) True XLOC_002963