RNA id: TCONS_00005415


Basic Information

Item Value
RNA id TCONS_00005415
length 1260
RNA type mRNA
GC content 0.33
exon number 1
gene id XLOC_002931
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 36224470 ~ 36225729 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

agGTGGCAAAACCCCAGACAGCAGGTGTCATGAACTTCATGCAGTCAAACTCTTCTGCAAACACGACCTTTGTTCGTCCTGCAACCTTTTTTCTAAACGGCCTTTCTAATGTTCCACATGTAAAATATTACTATATGTTCTTGTCTTTAGTTCATGTTGCTACTGTTTTGGGAAACTCATTTCTCATGAGTACTATTTATTTAGCTCGCAGACTTCACACAGCcaaatatattgttgttttcCATTTGGCTTTTTCTGATCTCTGTGGAAGCTCAACTGTTGTTCCAAAAATCATTGACACGTTTTTATTTGAGCACCAGGACATTTTATATGAAGCATGTTTGGCAAAtatgttttttgtgtattttttcatGAGTATGCAATCTTTAACATTACTTATCTTAGCTTATGACAGACTAGTTGCTATTTGTTTTCCTCTCCGATATCATGCCATTGTAACCAAGCCGTCAATGTTTCTTATCATAGGAGCGATGTGGATTTTTTCTTTGACATATTTTTCAGTGCTTGTAGGTTTGGTCAACAGAATTTCTTTTTGTGGATCTAATGTGATTGACAGTTATTTTTGTGATCATGGTCTTATTTATAAACTTGCTTGTAATGATATTTCTATAAATTTACTGATGGGGAAAATGACATTTGGTCTCCTAATGTGTACACCCCTCATACTGATTTTTCTCTCATATTTTTTCATTGCTCTGGCTCTGCTTAAGATTGCTCATGGTGGTGCACGGATAAAAGCGATGAAAACCTGCACCTCACATCTAATGTTAGTGGCGATCGGCTATTTCCCACTTATAAGCAATCAAATTGCAGCTTTAACAACATCTATTGATCCAAACACACGAATATTTAACAACTCTTTGAGACAGGTAATACCATCTATGCTGAATCCCATCATATACACTCTGAAGACAGAGGAGGTCATGGAATCCATGAAAGACCTGTACAAACGAAGAAAAATTAACACAGCTatagaaagaaaaatgaaatgtgaaaggggaaattaaaatatatgtataatatatatactgtatatatatatatataaatatataatttttttttaaaatctgctgtGATCATTCGACAAATTTCTAATATGCACTTAACAgatgttgttttgtttaatttactttGTAAAGAGTCAAttatctttaaatatttaaatcttttGTGTTGaaacctattaaaaaaaaactgtgcttTCCTCATCAGCATCTTCACAATCTTGAATATATA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0050896 response to stimulus biological_process
GO:0007608 sensory perception of smell biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004984 olfactory receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070804-6 Predicted to enable odorant binding activity and olfactory receptor activity. Predicted to be involved in detection of chemical stimulus involved in sensory perception of smell. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDART00000127677

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006096 lncRNA downstream 130937 35811752 ~ 36093533 (-) False XLOC_002925
TCONS_00006095 lncRNA downstream 130937 35811752 ~ 36093533 (-) True XLOC_002925
TCONS_00006094 lncRNA downstream 130977 35811752 ~ 36093493 (-) False XLOC_002925
TCONS_00006093 lncRNA downstream 130977 35811752 ~ 36093493 (-) False XLOC_002925
TCONS_00006092 lncRNA downstream 260069 35811752 ~ 35964401 (-) False XLOC_002925
TCONS_00006097 lncRNA upstream 239614 36465343 ~ 36469895 (-) True XLOC_002939
TCONS_00006098 lncRNA upstream 369651 36595380 ~ 36610901 (-) True XLOC_002942
TCONS_00006099 lncRNA upstream 416437 36642166 ~ 36650904 (-) True XLOC_002944
TCONS_00005434 lncRNA upstream 428468 36654197 ~ 36662600 (-) False XLOC_002945
TCONS_00006100 lncRNA upstream 428468 36654197 ~ 36662611 (-) True XLOC_002945
TCONS_00005414 mRNA downstream 1465 36221505 ~ 36223005 (-) True XLOC_002930
TCONS_00005413 mRNA downstream 4409 36217239 ~ 36220061 (-) True XLOC_002929
TCONS_00005412 mRNA downstream 9888 36212575 ~ 36214582 (-) True XLOC_002928
TCONS_00005411 mRNA downstream 16733 36205211 ~ 36207737 (-) True XLOC_002927
TCONS_00005409 mRNA downstream 555886 35664129 ~ 35668584 (-) True XLOC_002924
TCONS_00005416 mRNA upstream 4873 36230602 ~ 36231741 (-) True XLOC_002932
TCONS_00005417 mRNA upstream 9256 36234985 ~ 36236610 (-) True XLOC_002933
TCONS_00005418 mRNA upstream 12252 36237981 ~ 36240806 (-) True XLOC_002934
TCONS_00005419 mRNA upstream 17162 36242891 ~ 36244864 (-) True XLOC_002935
TCONS_00005420 mRNA upstream 26258 36251987 ~ 36254445 (-) False XLOC_002936
TCONS_00005410 other downstream 61176 36163179 ~ 36163294 (-) True XLOC_002926
TCONS_00005408 other downstream 570116 35654245 ~ 35654354 (-) True XLOC_002923
TCONS_00005406 other downstream 604021 35620333 ~ 35620449 (-) True XLOC_002922
TCONS_00005403 other downstream 837228 35369837 ~ 35387242 (-) True XLOC_002918
TCONS_00005381 other downstream 1232056 34984618 ~ 34992414 (-) False XLOC_002907
TCONS_00005427 other upstream 261889 36487618 ~ 36502331 (-) True XLOC_002940
TCONS_00005438 other upstream 455923 36681652 ~ 36682514 (-) True XLOC_002946
TCONS_00005456 other upstream 1126751 37352480 ~ 37357303 (-) True XLOC_002957
TCONS_00005460 other upstream 1825923 38051652 ~ 38051766 (-) False XLOC_002962
TCONS_00005461 other upstream 1846348 38072077 ~ 38072168 (-) True XLOC_002963