RNA id: TU2567384


Basic Information

Item Value
RNA id TU2567384
length 524
lncRNA type intronic
GC content 0.46
exon number 2
gene id G2245166
representative True

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 4543285 ~ 4543871 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCAAACCATCAATGTGTCCAAGACTTGACCGCCTGGTCGGAGAGgttggagcagagaggagaggagaagacgtGATACTCTGgttggagcagagaggagaggagaagacgtGATACTCTGgttggagcagagaggagaggagaagacgtGATACTCTGgttggagcagagaggagaggagaagacgtGATACTCTGgttggagcagagaggagaggagaagaCATGATACTCTGgttggagcagagaggagagaagacatgaTACTCTGgttggagcagagaggagagaagacatgaCCGTCTGGTTGGAGCAGAGATGAGACACTAGACATCCTACGTCATTTGTAACAGCGAAAGGAGGACTgttatcaaaggccttttcgtAAAAACAAGGATTTTTCTGCCCTTGAGTTTATTTTCTCTCGGGTCGCCTTAGTCCAAACAGTGTAAAAACTTTTCAATTACTTGTTGGGTTGGAGAAAcgctttcagtgtaaacttaaaatgactaaaaccagaaAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2567340 lncRNA downstream 76783 4466290 ~ 4466502 (-) True G2245129
TU2567339 lncRNA downstream 85278 4457649 ~ 4458007 (-) True G2245128
TU2567216 lncRNA downstream 121104 4421881 ~ 4422181 (-) True G2245019
TU2567210 lncRNA downstream 134272 4408750 ~ 4409013 (-) True G2245014
TU2567207 lncRNA downstream 145032 4397181 ~ 4398253 (-) False G2245011
TU2567386 lncRNA upstream 6794 4550665 ~ 4551406 (-) True G2245168
TU2567401 lncRNA upstream 33523 4577394 ~ 4577769 (-) True G2245183
TU2567411 lncRNA upstream 45678 4589549 ~ 4590921 (-) False LOC110504469
TU2567414 lncRNA upstream 45678 4589549 ~ 4590921 (-) True LOC110504469
TU2567444 lncRNA upstream 88109 4631980 ~ 4662931 (-) False G2245211
XM_036970240.1 mRNA downstream 252794 4237048 ~ 4290491 (-) True LOC110513918
XM_036970239.1 mRNA downstream 256088 4236169 ~ 4287197 (-) False LOC110513918
XM_036970241.1 mRNA downstream 256088 4236169 ~ 4287197 (-) False LOC110513918
XM_036970242.1 mRNA downstream 256088 4236169 ~ 4287197 (-) False LOC110513918
XM_036970246.1 mRNA downstream 343342 4130654 ~ 4199943 (-) True LOC110504518
XM_021583225.2 mRNA upstream 45562 4589433 ~ 4594305 (-) False LOC110504469
XR_005041129.1 mRNA upstream 45562 4589433 ~ 4594305 (-) False LOC110504469
XM_036969659.1 mRNA upstream 243568 4787439 ~ 4788320 (-) True LOC118945992
XM_036969869.1 mRNA upstream 944858 5488729 ~ 5526785 (-) False LOC110504358
XM_036969870.1 mRNA upstream 944858 5488729 ~ 5526792 (-) False LOC110504358
TU2566964 other downstream 430284 4111702 ~ 4113001 (-) False G2244811
TU2566965 other downstream 430284 4111702 ~ 4113001 (-) False G2244811
TU2566966 other downstream 430284 4111702 ~ 4113001 (-) True G2244811
TU2566928 other downstream 442613 4098767 ~ 4100672 (-) True higd2a
TU2565787 other downstream 1605743 2936708 ~ 2937542 (-) True G2243801
TU2568854 other upstream 1304248 5848119 ~ 5852202 (-) False G2246314
TU2568862 other upstream 1304248 5848119 ~ 5852599 (-) True G2246314
TU2570139 other upstream 2326716 6870587 ~ 6871100 (-) True G2247416
TU2570306 other upstream 2394752 6938623 ~ 7024539 (-) False G2247565
TU2570303 other upstream 2404249 6948120 ~ 7024539 (-) True G2247565

Expression Profile