RNA id: TU2567658


Basic Information

Item Value
RNA id TU2567658
length 613
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G2245358
representative True

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 4844189 ~ 4846096 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctctctacagttgataaggatcagtagtgggtctactctctacagttgataaggatcagtagtgggtctactctctacagttgataaggatcagtagtgggccTACTCTCtacagtttataaggatcagtagtgggtctactctggacagttgataaggatcagtagtgggtctactctggacagttgataaggatcagtagtgggtctattctccacagtttataaggatcagtagtgggtctactctccaCAGTTGatgaggatcagtagtgggtctactctggacagtttataaggatcagtagtgggtctactctctacagttgataaggatcagtagtgggtctactctccacagttgataaggatcagtagtgggtctacactccacagttgataaggatcagtagtgggtctactctccacagttgataaggatcagtagtgggtctactctccacagttgataaggatcagtagtgggtctactctctacagttgataaggatcagtagtgggtctactctggacagtttataaggatcagtagtgggtctactctctacagttgataaggatcagtagtgggtctactctctacagttgataag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2567648 lncRNA downstream 3078 4840742 ~ 4841111 (-) True G2245352
TU2567523 lncRNA downstream 110851 4733066 ~ 4733338 (-) True G2245270
TU2567518 lncRNA downstream 114482 4729352 ~ 4729707 (-) True G2245265
TU2567513 lncRNA downstream 119456 4724417 ~ 4724733 (-) True G2245260
TU2567483 lncRNA downstream 135805 4708181 ~ 4708384 (-) True G2245238
TU2567676 lncRNA upstream 17624 4863720 ~ 4863974 (-) True G2245376
TU2567807 lncRNA upstream 110881 4956977 ~ 4960423 (-) True G2245487
TU2567823 lncRNA upstream 140181 4986277 ~ 4986786 (-) True G2245500
TU2567826 lncRNA upstream 147188 4993284 ~ 4993547 (-) True G2245503
TU2567844 lncRNA upstream 174008 5020104 ~ 5020427 (-) True G2245518
XM_036969659.1 mRNA downstream 55869 4787439 ~ 4788320 (-) True LOC118945992
XM_021583225.2 mRNA downstream 249884 4589433 ~ 4594305 (-) False LOC110504469
XR_005041129.1 mRNA downstream 249884 4589433 ~ 4594305 (-) False LOC110504469
XM_036970240.1 mRNA downstream 553698 4237048 ~ 4290491 (-) True LOC110513918
XM_036970242.1 mRNA downstream 556992 4236169 ~ 4287197 (-) False LOC110513918
XM_036969869.1 mRNA upstream 642633 5488729 ~ 5526785 (-) False LOC110504358
XM_036969870.1 mRNA upstream 642633 5488729 ~ 5526792 (-) False LOC110504358
XM_036969842.1 mRNA upstream 686763 5532859 ~ 5589946 (-) False LOC110504491
XM_036969840.1 mRNA upstream 686763 5532859 ~ 5604780 (-) False LOC110504491
XM_036969841.1 mRNA upstream 686763 5532859 ~ 5604780 (-) True LOC110504491
TU2567370 other downstream 222199 4535841 ~ 4621990 (-) True G2245152
TU2566964 other downstream 731188 4111702 ~ 4113001 (-) False G2244811
TU2566965 other downstream 731188 4111702 ~ 4113001 (-) False G2244811
TU2566966 other downstream 731188 4111702 ~ 4113001 (-) True G2244811
TU2566928 other downstream 743517 4098767 ~ 4100672 (-) True higd2a
TU2568854 other upstream 1002023 5848119 ~ 5852202 (-) False G2246314
TU2568862 other upstream 1002023 5848119 ~ 5852599 (-) True G2246314
TU2570139 other upstream 2024491 6870587 ~ 6871100 (-) True G2247416
TU2570306 other upstream 2092527 6938623 ~ 7024539 (-) False G2247565
TU2570303 other upstream 2102024 6948120 ~ 7024539 (-) True G2247565

Expression Profile