RNA id: TU2567807


Basic Information

Item Value
RNA id TU2567807
length 1884
lncRNA type inter_gene
GC content 0.43
exon number 5
gene id G2245487
representative True

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 4956977 ~ 4960423 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCTAGACTACCAGTACTATACTGctcctctatactgtctagactaccagtactatactgctcctcctctatactgtctagactaccagtactttactcctcctctatactgtctagactaccagtactatactgctcctcctctatactgtctagactaccagtactatactgctcctcctctaaactgtctagactaccagtactatactgctcctctatactgtctagactaccagtactatactgctcctcctttatactgtctagactaccagtactatactgctcctcctctaaactgtctagactaccagtactatactgctcctcctctatactgtctagactaccagtactatactgctcctcctctatactgtctagactaccagtactatactgctcctcctctaaactgtctagactaccagtactatactgctcctctatactgtctagactaccagtactatactgctcctcctctatactgtctagactaccagtactatactgctcctctatactgtctagactaccagtactatactgctcctcctctatactgtctagactaccagtactatactgctcctcctctatactgtctagactaccagtactgtactcctcctctatactgtctagactaccagtactatactgctcctcctctaaactgtctagactaccagtactatactgctcctctatactgtctagactaccagtactatactgctcctcctctaaactgtctagactaccagtactatactgctcctcctctatactgtctagactaccagtactgtactcctcctctatactgtctagaCTACCAGTACTTTACTGCTCCTCCTCTAAACTGTCTAGACTACCAGTACTATACtgctcctcctctatactgtctagactaccagtactatactgctcctcctctatactgtctagactaccagtactatactgctcctcctctaaactgtctagactaccagtactatactgctcctctatactgtctagactaccagtactatactgctcctcctctatactgtctagactaccagtactgtactcctcctctatactgtctagaCTACCAGTACTTTACTGCTCCTCCTCTAAACTGTCTAGACTACCAGTACTATACTGctcctctatactgtctagactaccagtactatactgctcctcctctatactgtctagactaccagtactgtactcctcctctatactgtctagactaccagtactgtactcctcctctatactgtctagaCTACCAGTACTATACTGCTCCTCCTCTAAACTGTCTAGACTACCAGTACTATACTGCTCCTCCTCTATATTGTATAGACTACCAGTACTATACTGctcctctatactgtctagaccaccagtactatactgctcctcctctatactgtctagactaccagtactgctcctcctctatactgtctagactaccagtactgctcctcctctatactgtctagactaccagtactatactgctcctctatactgtctagactaccagtactatactgctcctctatactgtctagactaccagtactatactgctcctctatactgtctagactaccagtactatactgctcctctatactgtctagactaccagtactgtactcctcctctatactgtctagactaccagtactatactgctcctcctctatactgtctagactaccagtactatactgctcctcctctatactgtctagactaccagtactgtactgctcctctatactgtctagactaccagtactatactgctcctcctctatactgtctagaCTGTCAGTACTATACTGCTCCTCCTCTATAATGTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2567676 lncRNA downstream 93003 4863720 ~ 4863974 (-) True G2245376
TU2567658 lncRNA downstream 110881 4844189 ~ 4846096 (-) True G2245358
TU2567648 lncRNA downstream 115866 4840742 ~ 4841111 (-) True G2245352
TU2567523 lncRNA downstream 223639 4733066 ~ 4733338 (-) True G2245270
TU2567518 lncRNA downstream 227270 4729352 ~ 4729707 (-) True G2245265
TU2567823 lncRNA upstream 25854 4986277 ~ 4986786 (-) True G2245500
TU2567826 lncRNA upstream 32861 4993284 ~ 4993547 (-) True G2245503
TU2567844 lncRNA upstream 59681 5020104 ~ 5020427 (-) True G2245518
TU2567849 lncRNA upstream 63908 5024331 ~ 5024545 (-) True G2245523
TU2567862 lncRNA upstream 77738 5038161 ~ 5038368 (-) True G2245536
XM_036969659.1 mRNA downstream 168657 4787439 ~ 4788320 (-) True LOC118945992
XM_021583225.2 mRNA downstream 362672 4589433 ~ 4594305 (-) False LOC110504469
XR_005041129.1 mRNA downstream 362672 4589433 ~ 4594305 (-) False LOC110504469
XM_036970240.1 mRNA downstream 666486 4237048 ~ 4290491 (-) True LOC110513918
XM_036970242.1 mRNA downstream 669780 4236169 ~ 4287197 (-) False LOC110513918
XM_036969869.1 mRNA upstream 528306 5488729 ~ 5526785 (-) False LOC110504358
XM_036969870.1 mRNA upstream 528306 5488729 ~ 5526792 (-) False LOC110504358
XM_036969842.1 mRNA upstream 572436 5532859 ~ 5589946 (-) False LOC110504491
XM_036969840.1 mRNA upstream 572436 5532859 ~ 5604780 (-) False LOC110504491
XM_036969841.1 mRNA upstream 572436 5532859 ~ 5604780 (-) True LOC110504491
TU2567370 other downstream 334987 4535841 ~ 4621990 (-) True G2245152
TU2566964 other downstream 843976 4111702 ~ 4113001 (-) False G2244811
TU2566965 other downstream 843976 4111702 ~ 4113001 (-) False G2244811
TU2566966 other downstream 843976 4111702 ~ 4113001 (-) True G2244811
TU2566928 other downstream 856305 4098767 ~ 4100672 (-) True higd2a
TU2568854 other upstream 887696 5848119 ~ 5852202 (-) False G2246314
TU2568862 other upstream 887696 5848119 ~ 5852599 (-) True G2246314
TU2570139 other upstream 1910164 6870587 ~ 6871100 (-) True G2247416
TU2570306 other upstream 1978200 6938623 ~ 7024539 (-) False G2247565
TU2570303 other upstream 1987697 6948120 ~ 7024539 (-) True G2247565

Expression Profile