RNA id: TU2571636


Basic Information

Item Value
RNA id TU2571636
length 792
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id G2248668
representative False

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 8153911 ~ 8157963 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCttttaatataaaaaaaaaaatcaatttaaagtTAACAAAAATATGGTACTGCACTGTGTGTAATGCAAACCGTACGGAGAAACTGTACAAGAAACACATGTTGATAATTAGGATGCAGTGCCATCTGGTGGTTGTAAAGAGAAAGAACTGTTGagtgttttttcccctcactACGGAGAGTAAATCTTGTTTTATCCCAATCCTTAAAGACAACTCTAGAGTCGCTGTTAAGCATCTCATTTTACATCTAAGACGGCACATTTTCTATAAACAAAAACAGTAGAAGAAAGTTGAGCATACGACTTAAGACAGATATCGGTTTACATGATATAGCCATTTAAACAGGTTTCCCTTTCTGGCAATGTTTAATGGACCAAAAGACAAGGATGTTGTATTGAACATATAGAGAAGAAATGATACAGCACAGGGATAGGTAACATGACTCCACGAAGTAGGGCCAATCATCCGTATAAACTCGGGTTTAAAGAGTGAATCAAAATACAGTGTGTTAGATCCCACTCAGGAATCATTAGGTAATCCAAACAGTTTGACTGTGCCTGCCTTGCTATCCCACTCAGGAATCATTAGGTAATCCAAACAGTTTGACTGTGCCTGCCTTGCTATCCCACTCAGGAATCATTAGGTAATCCAAACAGTTTGACTGTGCCAGACTCTCTATTGTTGTCGTACTTCCCTTCCTTGTCATCACATGCGTAGGCCAGCAGCGGTCTCTTAGGATGCCAGGCTACTGTGAACGTAGGAGACTCACACTGGACCTCCCACAGCTTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2571696 lncRNA downstream 2999 8153377 ~ 8153688 (-) True G2248710
TU2571693 lncRNA downstream 5003 8150311 ~ 8151684 (-) True G2248707
TU2571694 lncRNA downstream 6769 8149547 ~ 8149918 (-) True G2248708
TU2571449 lncRNA downstream 117038 8039444 ~ 8039649 (-) True G2248521
TU2571447 lncRNA downstream 117403 8039044 ~ 8039284 (-) True G2248519
TU2571697 lncRNA upstream 1351 8158884 ~ 8159274 (-) True G2248711
TU2571698 lncRNA upstream 1940 8159473 ~ 8160386 (-) True G2248712
TU2571699 lncRNA upstream 3540 8161073 ~ 8161952 (-) True G2248713
TU2571700 lncRNA upstream 5332 8162865 ~ 8164105 (-) True G2248714
TU2571701 lncRNA upstream 6636 8164169 ~ 8164693 (-) True G2248715
XM_021583263.2 mRNA downstream 51942 8091034 ~ 8104745 (-) True LOC110504508
XM_036969871.1 mRNA downstream 229928 7896711 ~ 7926759 (-) False LOC110504485
XM_036969872.1 mRNA downstream 229928 7896711 ~ 7926759 (-) True LOC110504485
XM_036970509.1 mRNA downstream 264509 7871894 ~ 7892178 (-) False LOC110504484
XM_021583273.2 mRNA upstream 15688 8173221 ~ 8224552 (-) False LOC110504516
XM_036970233.1 mRNA upstream 91999 8249532 ~ 8264238 (-) False LOC110504517
XM_036970234.1 mRNA upstream 91999 8249532 ~ 8264238 (-) False LOC110504517
XM_036970235.1 mRNA upstream 91999 8249532 ~ 8264238 (-) False LOC110504517
XM_036970236.1 mRNA upstream 91999 8249532 ~ 8264238 (-) False LOC110504517
TU2571450 other downstream 115207 8040876 ~ 8041480 (-) True G2248522
TU2570603 other downstream 900747 7255344 ~ 7255940 (-) True G2247813
TU2570306 other downstream 1132148 6938623 ~ 7024539 (-) False G2247565
TU2570303 other downstream 1132148 6948120 ~ 7024539 (-) True G2247565
TU2570139 other downstream 1285587 6870587 ~ 6871100 (-) True G2247416
TU2572664 other upstream 989258 9146791 ~ 9148302 (-) True c1qtnf2
TU2572681 other upstream 992355 9149888 ~ 9150141 (-) True G2249506
TU2573640 other upstream 1794784 9952317 ~ 9952703 (-) True G2250247
TU2574242 other upstream 2368258 10525791 ~ 10526568 (-) True G2250775
TU2575152 other upstream 2539659 10697192 ~ 10698407 (-) True G2251534