RNA id: TCONS_00006099


Basic Information

Item Value
RNA id TCONS_00006099
length 275
lncRNA type antisense_over
GC content 0.47
exon number 4
gene id XLOC_002944
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 36642166 ~ 36650904 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGGGAAAGTCACCAGATCAGCAAAACATGCTGCTGTACCGGCTCCGAAAAACTTGACAGCAGCGGTTGGAGGCAGATCGAAAATCCTTATATGCTGTCCCATAAATGTGATGCCATGCCTCTACCTCTGCCTTCCacatccagctaaaaccagtttcTTCAACGCACCCTGTGATCTTCATAGAGTCCGCCGATATTTATGGCGAGCTAACAAGACAATCTGATAaaagcaggaaagccgtccatatgaagAATGGAGGTTAAGCAGCCAATCAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006098 lncRNA downstream 31265 36595380 ~ 36610901 (-) True XLOC_002942
TCONS_00006097 lncRNA downstream 172271 36465343 ~ 36469895 (-) True XLOC_002939
TCONS_00006096 lncRNA downstream 548633 35811752 ~ 36093533 (-) False XLOC_002925
TCONS_00006095 lncRNA downstream 548633 35811752 ~ 36093533 (-) True XLOC_002925
TCONS_00006094 lncRNA downstream 548673 35811752 ~ 36093493 (-) False XLOC_002925
TCONS_00005434 lncRNA upstream 3293 36654197 ~ 36662600 (-) False XLOC_002945
TCONS_00006100 lncRNA upstream 3293 36654197 ~ 36662611 (-) True XLOC_002945
TCONS_00005437 lncRNA upstream 28644 36679548 ~ 36682522 (-) False XLOC_002946
TCONS_00005446 lncRNA upstream 152912 36803816 ~ 36807660 (-) True XLOC_002951
TCONS_00005450 lncRNA upstream 168473 36819377 ~ 36820823 (-) True XLOC_002952
TCONS_00005433 mRNA downstream 8240 36627741 ~ 36633926 (-) True XLOC_002943
TCONS_00005431 mRNA downstream 8284 36613035 ~ 36633882 (-) False XLOC_002943
TCONS_00005430 mRNA downstream 16414 36613004 ~ 36625752 (-) False XLOC_002943
TCONS_00005432 mRNA downstream 23492 36615958 ~ 36618674 (-) False XLOC_002943
TCONS_00005429 mRNA downstream 49680 36558815 ~ 36592486 (-) True XLOC_002941
TCONS_00005435 mRNA upstream 22483 36673387 ~ 36682509 (-) False XLOC_002946
TCONS_00005436 mRNA upstream 22500 36673404 ~ 36682515 (-) False XLOC_002946
TCONS_00005439 mRNA upstream 33096 36684000 ~ 36691681 (-) True XLOC_002947
TCONS_00005440 mRNA upstream 69262 36720166 ~ 36721726 (-) False XLOC_002948
TCONS_00005441 mRNA upstream 69331 36720235 ~ 36726188 (-) True XLOC_002948
TCONS_00005427 other downstream 139835 36487618 ~ 36502331 (-) True XLOC_002940
TCONS_00005410 other downstream 478872 36163179 ~ 36163294 (-) True XLOC_002926
TCONS_00005408 other downstream 987812 35654245 ~ 35654354 (-) True XLOC_002923
TCONS_00005406 other downstream 1021717 35620333 ~ 35620449 (-) True XLOC_002922
TCONS_00005403 other downstream 1254924 35369837 ~ 35387242 (-) True XLOC_002918
TCONS_00005438 other upstream 30748 36681652 ~ 36682514 (-) True XLOC_002946
TCONS_00005456 other upstream 701576 37352480 ~ 37357303 (-) True XLOC_002957
TCONS_00005460 other upstream 1400748 38051652 ~ 38051766 (-) False XLOC_002962
TCONS_00005461 other upstream 1421173 38072077 ~ 38072168 (-) True XLOC_002963
TCONS_00005463 other upstream 1423408 38074312 ~ 38074391 (-) True XLOC_002962

Expression Profile

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