RNA id: TCONS_00005434


Basic Information

Item Value
RNA id TCONS_00005434
length 266
lncRNA type antisense
GC content 0.46
exon number 3
gene id XLOC_002945
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 36654197 ~ 36662611 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGATACGTTCCGTTTTCAAATGTCGTCCTTCCGTGTTTTATAAGTTTATTAAACCATATTACTGAATACTATTCGAAGAGGTGCAAAATATGAGGTCAGCATGAGAGCTGTGAAAGCAGTTTAAAGCCACTTTTCTGATCCTTTGTCACGAGAAAGACATTTGCAAAGCGGCTGGTCCCTCTTTGGTCAGCATCATGAGGGCACAGTTCAGTGCGCTGCCGTACTGGCCGGCCGACGAGTTCATGAACCGCGTTTTCACCACGTC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000155920

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006099 lncRNA downstream 3293 36642166 ~ 36650904 (-) True XLOC_002944
TCONS_00006098 lncRNA downstream 43296 36595380 ~ 36610901 (-) True XLOC_002942
TCONS_00006097 lncRNA downstream 184302 36465343 ~ 36469895 (-) True XLOC_002939
TCONS_00006096 lncRNA downstream 560664 35811752 ~ 36093533 (-) False XLOC_002925
TCONS_00006095 lncRNA downstream 560664 35811752 ~ 36093533 (-) True XLOC_002925
TCONS_00005437 lncRNA upstream 16948 36679548 ~ 36682522 (-) False XLOC_002946
TCONS_00005446 lncRNA upstream 141216 36803816 ~ 36807660 (-) True XLOC_002951
TCONS_00005450 lncRNA upstream 156777 36819377 ~ 36820823 (-) True XLOC_002952
TCONS_00005454 lncRNA upstream 378478 37041078 ~ 37042232 (-) True XLOC_002955
TCONS_00005774 lncRNA upstream 755634 37418234 ~ 37476245 (-) True XLOC_002958
TCONS_00005433 mRNA downstream 20271 36627741 ~ 36633926 (-) True XLOC_002943
TCONS_00005431 mRNA downstream 20315 36613035 ~ 36633882 (-) False XLOC_002943
TCONS_00005430 mRNA downstream 28445 36613004 ~ 36625752 (-) False XLOC_002943
TCONS_00005432 mRNA downstream 35523 36615958 ~ 36618674 (-) False XLOC_002943
TCONS_00005429 mRNA downstream 61711 36558815 ~ 36592486 (-) True XLOC_002941
TCONS_00005435 mRNA upstream 10787 36673387 ~ 36682509 (-) False XLOC_002946
TCONS_00005436 mRNA upstream 10804 36673404 ~ 36682515 (-) False XLOC_002946
TCONS_00005439 mRNA upstream 21400 36684000 ~ 36691681 (-) True XLOC_002947
TCONS_00005440 mRNA upstream 57566 36720166 ~ 36721726 (-) False XLOC_002948
TCONS_00005441 mRNA upstream 57635 36720235 ~ 36726188 (-) True XLOC_002948
TCONS_00005427 other downstream 151866 36487618 ~ 36502331 (-) True XLOC_002940
TCONS_00005410 other downstream 490903 36163179 ~ 36163294 (-) True XLOC_002926
TCONS_00005408 other downstream 999843 35654245 ~ 35654354 (-) True XLOC_002923
TCONS_00005406 other downstream 1033748 35620333 ~ 35620449 (-) True XLOC_002922
TCONS_00005403 other downstream 1266955 35369837 ~ 35387242 (-) True XLOC_002918
TCONS_00005438 other upstream 19052 36681652 ~ 36682514 (-) True XLOC_002946
TCONS_00005456 other upstream 689880 37352480 ~ 37357303 (-) True XLOC_002957
TCONS_00005460 other upstream 1389052 38051652 ~ 38051766 (-) False XLOC_002962
TCONS_00005461 other upstream 1409477 38072077 ~ 38072168 (-) True XLOC_002963
TCONS_00005463 other upstream 1411712 38074312 ~ 38074391 (-) True XLOC_002962

Expression Profile

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