RNA id: TU2591329


Basic Information

Item Value
RNA id TU2591329
length 239
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G2265490
representative True

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 25309430 ~ 25309668 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGGAAAGGAATGGGGAAAGAATGGGATTTGGGGGATAAAcgctgaaaataaggtctgagacCTTAAGTGTTGAGTTCTCTGAGATATCAGCCAGGTAACATGATCTTTATGATTTATGAAGCCTATGTGCTTTATGTGCTGATGTTAGCTGATGAAGATGATCtcctagaacaaaacatagaagatttcttaagcctgtgtttaccacagaccttattttcagtGTTTATACTAAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2591319 lncRNA upstream 10339 25298802 ~ 25299091 (+) True G2265480
TU2591315 lncRNA upstream 16924 25292297 ~ 25292506 (+) True G2265476
TU2591273 lncRNA upstream 104197 25204924 ~ 25205233 (+) True G2265434
TU2591262 lncRNA upstream 109816 25199326 ~ 25199614 (+) True G2265424
TU2591270 lncRNA upstream 112899 25196236 ~ 25196531 (+) True G2265432
TU2591330 lncRNA downstream 785 25310453 ~ 25310733 (+) True G2265491
TU2591292 lncRNA downstream 1460 25311128 ~ 25314079 (+) True G2265453
TU2591291 lncRNA downstream 11196 25320864 ~ 25321611 (+) True G2265452
TU2591299 lncRNA downstream 44858 25354526 ~ 25401997 (+) True G2265460
TU2591356 lncRNA downstream 53264 25362932 ~ 25368820 (+) True G2265513
XM_036970071.1 mRNA upstream 788 25304278 ~ 25308642 (+) True LOC110504297
XM_036970479.1 mRNA upstream 94050 25202079 ~ 25215380 (+) True hmgxb3
NM_001124443.1 mRNA upstream 117952 25183222 ~ 25191478 (+) True LOC100136157
XM_036969696.1 mRNA upstream 128022 25095869 ~ 25181408 (+) False LOC110504826
XM_036970123.1 mRNA downstream 208265 25517933 ~ 25536990 (+) False LOC110504832
XM_036970124.1 mRNA downstream 208265 25517933 ~ 25536990 (+) True LOC110504832
XR_005041144.1 mRNA downstream 231308 25540976 ~ 25551549 (+) True LOC118946013
XM_021583687.2 mRNA downstream 241909 25551577 ~ 25576248 (+) False LOC110504839
XM_036969756.1 mRNA downstream 248195 25557863 ~ 25576248 (+) True LOC110504839
TU2591263 other upstream 65101 25215651 ~ 25244329 (+) True G2265425
TU2589999 other upstream 1118395 24190750 ~ 24191035 (+) True G2264345
TU2589998 other upstream 1119078 24190073 ~ 24190352 (+) True G2264344
TU2589847 other upstream 1428398 23880781 ~ 23881032 (+) True G2264210
TU2589730 other upstream 1445457 23855609 ~ 23863973 (+) False G2264113
TU2591464 other downstream 272325 25581993 ~ 25586067 (+) True si:dkey-74k8.4
TU2591497 other downstream 315477 25625145 ~ 25626856 (+) False G2265625
TU2591501 other downstream 315477 25625145 ~ 25626856 (+) True G2265625
TU2591580 other downstream 514372 25824040 ~ 25825540 (+) True LOC110504852
TU2591669 other downstream 668467 25978135 ~ 25978638 (+) True G2265744

Expression Profile