RNA id: TU2592733


Basic Information

Item Value
RNA id TU2592733
length 543
lncRNA type intronic
GC content 0.48
exon number 1
gene id G2266577
representative True

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 26387319 ~ 26387861 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGGTTAATACTGCCTGGTACTTACAGTCTGTCttcatggttctgttagtctctCCTGGGACTATAGCTGGTTAATACTGCCTGGTACTTACAGTCTGTCttcatggttctgttagtctctCCTGGGACTATAGCTGGTTAATACTGCCTGGTACTTACAGTCTGTCttcatggttctgttagtctctCCTGGGACTATAGCTGGTTAATACTGCCTGGTACTTACAGTCTGTCttcatggttctgttagtctctCCTGGGACTATAGCTGGTTAATACTGCATGGTACCTAGAGCAGCACCAACCTCTACAGTACATCTCAGGAGAAAGCAGCAAAGCTTGCTAATTTCCCCCTCGatacacctctccctctcctacccacttcttcatccctctcctacccacttcttcatccctctcctacccacttcttcatccctctcctacccacttcttcatccctctcctacccacttcttcatccctctcctacCCACTTCTTCATCCCTCTTCTACCcacttcttcatccctctcctacccac

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2592677 lncRNA upstream 89144 26297520 ~ 26298175 (+) True G2266528
TU2592676 lncRNA upstream 89435 26297159 ~ 26297884 (+) False G2266528
TU2592596 lncRNA upstream 161789 26225297 ~ 26225530 (+) True G2266467
TU2592584 lncRNA upstream 171213 26215866 ~ 26216106 (+) True G2266455
TU2592583 lncRNA upstream 172334 26214768 ~ 26214985 (+) True G2266454
TU2592738 lncRNA downstream 6995 26394856 ~ 26396411 (+) True G2266581
TU2592741 lncRNA downstream 17852 26405713 ~ 26407952 (+) False G2266584
TU2592742 lncRNA downstream 17852 26405713 ~ 26407998 (+) True G2266584
TU2592745 lncRNA downstream 18689 26406550 ~ 26409550 (+) False G2266585
TU2592743 lncRNA downstream 18985 26406846 ~ 26409933 (+) True G2266585
XM_036970342.1 mRNA upstream 95649 26290881 ~ 26291670 (+) False LOC118946064
XM_036970441.1 mRNA upstream 110914 26213009 ~ 26276405 (+) True LOC110504418
XM_036969568.1 mRNA upstream 269591 25980922 ~ 26117728 (+) False LOC110504415
XM_036969569.1 mRNA upstream 269591 25980922 ~ 26117728 (+) True LOC110504415
XM_036969972.1 mRNA upstream 456715 25909671 ~ 25930604 (+) True LOC110504854
XM_036970494.1 mRNA downstream 737759 27125620 ~ 27174120 (+) True LOC110504898
XM_021583773.2 mRNA downstream 1311828 27699689 ~ 27711246 (+) False LOC110504902
XM_021583772.2 mRNA downstream 1311830 27699691 ~ 27711246 (+) False LOC110504902
XM_036970184.1 mRNA downstream 1311830 27699691 ~ 27711246 (+) True LOC110504902
XM_036969915.1 mRNA downstream 1323891 27711752 ~ 27774452 (+) False LOC110504904
TU2592687 other upstream 14836 26361992 ~ 26372483 (+) True LOC110504416
TU2592624 other upstream 95315 26289725 ~ 26292004 (+) False LOC118946064
TU2592622 other upstream 95315 26289825 ~ 26292004 (+) False LOC118946064
TU2592627 other upstream 95658 26289725 ~ 26291661 (+) False LOC118946064
TU2592623 other upstream 95658 26289825 ~ 26291661 (+) False LOC118946064
TU2592839 other downstream 203405 26591266 ~ 26620948 (+) True G2266668
TU2593017 other downstream 546859 26934720 ~ 26935889 (+) True G2266826
TU2594875 other downstream 2379016 28766877 ~ 28767729 (+) True G2268340
TU2594947 other downstream 2508894 28896755 ~ 28898079 (+) True G2268400
TU2597789 other downstream 4789029 31176890 ~ 31181107 (+) True G2271027

Expression Profile