RNA id: TU2592745



Basic Information


Item Value
RNA id TU2592745
length 999
lncRNA type intronic
GC content 0.48
exon number 3
gene id G2266585
representative False

Chromosome Information


Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 26406550 ~ 26409933 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gtaggaggagatgtagtagtaggaggaggaggaggtgtaggaggaggtggtgtaggaggaggaggtgtagtgttagtagtagtaggaggaggtgtggtgttagtagtaggaggaggtgtggtggtagtaggaggaggtgtggtggtagtaggaggaggtgtggtgttagtaggaggaggtgtggtgttagtaggaggaggtgtggtgtTAGTAGGAGGTGTGGTGTTAGTAGGAGGTGTGGTGTTAGTAGGAGGTGTGGTGGTAgtaggaggaggtgtggtgttagtaggaggaggtgtggtgtTAGTAGGAGTAGGAAGTGTGGTAGTGGTAGGAAGTGTAGtgttagtaggaggaggaggtgtagtgttagtaggaggaggtgtagtgttagtaggaggaggtgtggtggtaGTAATTGTTGTAGGAGGTGTGGTGTTAGTAATTGTTGTAGGaggtgtggtggtagtagtagtggaggtgtagtagtagtggaggtatagtagtagttgtggaggtggtgtagtagtagttgtagtggtggCGGTGTAGTTGTAGTGGTGGatgtgtagtggtagtagtggaggtgtagtagtaggtgtagtatttgatgtgtagtagtagtggaggtGTAATAGTGGAGGTTCAGTagtaatggaggtgtagatgaggtgttgatcggctatgaaaagccaactgacatttactcttgaggtgctgatcTGTTCCACCCTTGACAAGTgctagtagaggtgtagaggttagaggtgtagtggtagtggtagaggtgtagtagtagtggttagaggtgtagtggtagtggttagaggtgtagtggtagaggtgtagtagtagtggttagaGGTGTAGTGGGAGAGGTGTAGTGGTAAAGGTGTAGTGGTAGAGGTTAGAGGTGTAGAGGTTAGAGGTGTAGTGGTAAAGTTGTAGTGGTAGAGGTTAGAGGTGTAGtagtagaggttagaggttagaggtgtaGTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2592738 lncRNA upstream 10139 26394856 ~ 26396411 (+) True G2266581
TU2592733 lncRNA upstream 18689 26387319 ~ 26387861 (+) True G2266577
TU2592677 lncRNA upstream 108375 26297520 ~ 26298175 (+) True G2266528
TU2592676 lncRNA upstream 108666 26297159 ~ 26297884 (+) False G2266528
TU2592596 lncRNA upstream 181020 26225297 ~ 26225530 (+) True G2266467
TU2592748 lncRNA downstream 1881 26411431 ~ 26411999 (+) True G2266587
TU2592760 lncRNA downstream 27654 26437204 ~ 26437508 (+) True G2266599
TU2592762 lncRNA downstream 34960 26444510 ~ 26444750 (+) True G2266601
TU2592763 lncRNA downstream 35431 26444981 ~ 26445220 (+) True G2266602
TU2592764 lncRNA downstream 37822 26447372 ~ 26447835 (+) True G2266603
XM_036970342.1 mRNA upstream 114880 26290881 ~ 26291670 (+) False LOC118946064
XM_036970441.1 mRNA upstream 130145 26213009 ~ 26276405 (+) True LOC110504418
XM_036969568.1 mRNA upstream 288822 25980922 ~ 26117728 (+) False LOC110504415
XM_036969569.1 mRNA upstream 288822 25980922 ~ 26117728 (+) True LOC110504415
XM_036969972.1 mRNA upstream 475946 25909671 ~ 25930604 (+) True LOC110504854
XM_036970494.1 mRNA downstream 716070 27125620 ~ 27174120 (+) True LOC110504898
XM_021583773.2 mRNA downstream 1290139 27699689 ~ 27711246 (+) False LOC110504902
XM_021583772.2 mRNA downstream 1290141 27699691 ~ 27711246 (+) False LOC110504902
XM_036970184.1 mRNA downstream 1290141 27699691 ~ 27711246 (+) True LOC110504902
XM_036969915.1 mRNA downstream 1302202 27711752 ~ 27774452 (+) False LOC110504904
TU2592687 other upstream 34067 26361992 ~ 26372483 (+) True LOC110504416
TU2592622 other upstream 114546 26289825 ~ 26292004 (+) False LOC118946064
TU2592623 other upstream 114889 26289825 ~ 26291661 (+) False LOC118946064
TU2592632 other upstream 114994 26289725 ~ 26291556 (+) False LOC118946064
TU2592839 other downstream 181716 26591266 ~ 26620948 (+) True G2266668
TU2593017 other downstream 525170 26934720 ~ 26935889 (+) True G2266826
TU2594875 other downstream 2357327 28766877 ~ 28767729 (+) True G2268340
TU2594947 other downstream 2487205 28896755 ~ 28898079 (+) True G2268400
TU2597789 other downstream 4767340 31176890 ~ 31181107 (+) True G2271027

Expression Profile