RNA id: TU2592760


Basic Information

Item Value
RNA id TU2592760
length 305
lncRNA type intronic
GC content 0.56
exon number 1
gene id G2266599
representative True

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 26437204 ~ 26437508 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gccctctagcgactccttgtgccgcgcctgcaggctgacttcagtcgtcagttgaatggtgtttcctccgacacattggtgcagctggcatCCGTGTTAAGCGAGCGGGGGTTGAGAAGCGCGGCTTGGcgagtcatgtttcggaggacacatgactcgagCTTTGCTTCTCCCGCTCGACCTCCACTTATGCTCTCTGCGAGGGCAGAGATGCCATCCATTGACTTTTCCTCCCGTTGTACATGTCGGGATGCTTTTTGTGAGGACATATTGTTCCGTCTCACGATTCCCGAGCAGGAAACAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2592748 lncRNA upstream 25205 26411431 ~ 26411999 (+) True G2266587
TU2592743 lncRNA upstream 27271 26406846 ~ 26409933 (+) True G2266585
TU2592745 lncRNA upstream 27654 26406550 ~ 26409550 (+) False G2266585
TU2592746 lncRNA upstream 27726 26407424 ~ 26409478 (+) True G2266586
TU2592742 lncRNA upstream 29206 26405713 ~ 26407998 (+) True G2266584
TU2592762 lncRNA downstream 7002 26444510 ~ 26444750 (+) True G2266601
TU2592763 lncRNA downstream 7473 26444981 ~ 26445220 (+) True G2266602
TU2592764 lncRNA downstream 9864 26447372 ~ 26447835 (+) True G2266603
TU2592765 lncRNA downstream 10845 26448353 ~ 26448625 (+) True G2266604
TU2592783 lncRNA downstream 49471 26486979 ~ 26487504 (+) True G2266620
XM_036970342.1 mRNA upstream 145534 26290881 ~ 26291670 (+) False LOC118946064
XM_036970441.1 mRNA upstream 160799 26213009 ~ 26276405 (+) True LOC110504418
XM_036969568.1 mRNA upstream 319476 25980922 ~ 26117728 (+) False LOC110504415
XM_036969569.1 mRNA upstream 319476 25980922 ~ 26117728 (+) True LOC110504415
XM_036969972.1 mRNA upstream 506600 25909671 ~ 25930604 (+) True LOC110504854
XM_036970494.1 mRNA downstream 688112 27125620 ~ 27174120 (+) True LOC110504898
XM_021583773.2 mRNA downstream 1262181 27699689 ~ 27711246 (+) False LOC110504902
XM_021583772.2 mRNA downstream 1262183 27699691 ~ 27711246 (+) False LOC110504902
XM_036970184.1 mRNA downstream 1262183 27699691 ~ 27711246 (+) True LOC110504902
XM_036969915.1 mRNA downstream 1274244 27711752 ~ 27774452 (+) False LOC110504904
TU2592687 other upstream 64721 26361992 ~ 26372483 (+) True LOC110504416
TU2592622 other upstream 145200 26289825 ~ 26292004 (+) False LOC118946064
TU2592623 other upstream 145543 26289825 ~ 26291661 (+) False LOC118946064
TU2592632 other upstream 145648 26289725 ~ 26291556 (+) False LOC118946064
TU2592839 other downstream 153758 26591266 ~ 26620948 (+) True G2266668
TU2593017 other downstream 497212 26934720 ~ 26935889 (+) True G2266826
TU2594875 other downstream 2329369 28766877 ~ 28767729 (+) True G2268340
TU2594947 other downstream 2459247 28896755 ~ 28898079 (+) True G2268400
TU2597789 other downstream 4739382 31176890 ~ 31181107 (+) True G2271027

Expression Profile