RNA id: TU2593416


Basic Information

Item Value
RNA id TU2593416
length 240
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G2267173
representative True

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 27003437 ~ 27003676 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTATTTAAGGTTGCCTACTTTTACCAGTGTGTGATTGTGCTTACATGTTTCTATGTAATGTGGGTAGACTGCATTCTACCTCGACTCTCAGGTAGAAGACCATGCTGTATTGTCTTCTCTCTTTTTTTAACATTAATATCAGCACTTAAGCAATTTCGTCCTCACCAGAGTAGGATTCATTATGCTCCAACATTCTCTTCCATATCAGACACTTCCTCCTCTATTTCAAAGTCACCATCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2593045 lncRNA upstream 10696 26992440 ~ 26992741 (+) True G2266850
TU2593043 lncRNA upstream 14264 26988469 ~ 26989173 (+) True G2266848
TU2593040 lncRNA upstream 24457 26974312 ~ 26978980 (+) True G2266845
TU2593004 lncRNA upstream 84641 26915156 ~ 26918796 (+) True G2266813
TU2592980 lncRNA upstream 123802 26873871 ~ 26879635 (+) True G2266789
TU2593543 lncRNA downstream 75372 27079048 ~ 27079268 (+) True G2267236
TU2593556 lncRNA downstream 84658 27088334 ~ 27088549 (+) True G2267249
TU2593574 lncRNA downstream 105875 27109551 ~ 27109990 (+) True G2267264
TU2593614 lncRNA downstream 180105 27183781 ~ 27186357 (+) True G2267296
TU2593565 lncRNA downstream 189901 27193577 ~ 27193904 (+) True G2267258
XM_036970339.1 mRNA upstream 519445 26298775 ~ 26483992 (+) False LOC110504416
XM_036970340.1 mRNA upstream 519445 26298775 ~ 26483992 (+) False LOC110504416
XM_036970341.1 mRNA upstream 519445 26298775 ~ 26483992 (+) False LOC110504416
XM_036970342.1 mRNA upstream 711767 26290881 ~ 26291670 (+) False LOC118946064
XM_036970441.1 mRNA upstream 727032 26213009 ~ 26276405 (+) True LOC110504418
XM_036970494.1 mRNA downstream 121944 27125620 ~ 27174120 (+) True LOC110504898
XM_021583773.2 mRNA downstream 696013 27699689 ~ 27711246 (+) False LOC110504902
XM_021583772.2 mRNA downstream 696015 27699691 ~ 27711246 (+) False LOC110504902
XM_036970184.1 mRNA downstream 696015 27699691 ~ 27711246 (+) True LOC110504902
XM_036969915.1 mRNA downstream 708076 27711752 ~ 27774452 (+) False LOC110504904
TU2593017 other upstream 67548 26934720 ~ 26935889 (+) True G2266826
TU2592839 other upstream 382489 26591266 ~ 26620948 (+) True G2266668
TU2592687 other upstream 630954 26361992 ~ 26372483 (+) True LOC110504416
TU2592623 other upstream 711776 26289825 ~ 26291661 (+) False LOC118946064
TU2594875 other downstream 1763201 28766877 ~ 28767729 (+) True G2268340
TU2594947 other downstream 1893079 28896755 ~ 28898079 (+) True G2268400
TU2597789 other downstream 4173214 31176890 ~ 31181107 (+) True G2271027
TU2599828 other downstream 5859760 32863436 ~ 32863779 (+) False G2272912
TU2600208 other downstream 6412414 33416090 ~ 33421685 (+) True LOC110505056

Expression Profile