RNA id: TU2593628


Basic Information

Item Value
RNA id TU2593628
length 6032
lncRNA type antisense_over
GC content 0.43
exon number 2
gene id G2267305
representative False

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 27204305 ~ 27281986 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggacagacttaAATTTATTCAGACAAACATTGTGGAACTGTTACAATAAAATCAAGATATTTTCAGCCCATAACATCAACATTCCATTATAGCTCCAGAAGGGGAAAAATAAGACACTGAAGAACTCACTACACTATGCTTCTATGGAAAGAGCTACATGAATCTAGCTACATTAAGGACAATTGATTTACACACTTTAGTCTGTTAAATGCAACTGGACAAAGCCACGGTGCCTTCACATGGCAATATATTACACCCCTTTCACAGAGTATTTTTTTCTCTTtacaaagtaaaaaatatatagaattaACAAAGAAGACTTTAGCAAATATGGccatgtatgtgtttgtttggacTAGCGGAGCTGTCATactagaactgtgtgtgtgtgtgtgtgtacaggttgGAAATGAGAAGGACCATTTCCTTCTCAATTATTGCGCTTTTGTTATTGCGCTTTTGTAGACGTTTGACCAACTAGGGTTACTCAGCTTTGTACACAAGTAGGCCAGGCAATGGAGGGACAGCAGTGACATCAGGACAGGGCAAGGGTCACTTAAGACATCATGAGAGGGCAAAGGTCAAGGCCAGATTGATGGCAGGATCAAAAAAGGAGCCTTACACTGCTTCGGAAAGAGATTACTTTATACACACATGTTACAAGtatgttacagtctctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgcgtgtgtgtgtgtgtattgtgttagtGGAAGGTTTATTGTCTCTCTGGATGATGTACACACAGAGAGGTCAGAGTTGAAGATGCAAAGGGTAAAAAAACGAAAGGGTCATCATGCATGTTATTGACGAGATCAACAAACAACCAATCAATATCAGggtcagaggtgagaggtcagaggGGATGCAGTGACCAGATGAGTTCATGTTGTGATCGATACAGGAAATCACCCAAAAGTTGTTACTAGATAcacagatatacagttgaagtcggaagtttacatccacttaggagtcattaaaacatttttttttcaaccagtccacaaatttcttgttaacaaactatagtttgggcaagtcggttaggacatctactttgtgcatgacacaagtaatttttccaataattgtttacagacagattatttcacttataattcactgtatcacaattccagtgggtcagaagtttacatacactaagttgactgtgcctttaaacagcttggaaaattccagagaattatgtcatggctttagaagcttctgataggctaattgacatcatttgagtcaactggatgtgtacctgtggatgtattttaaggcctactcagtgcctctttgcttgacatcatgggaaaatctaaagaaattacaaaaaaaaatgtagacctccacaagtctggttcatccttgggagcaatttccaaatgcctgaaggtaccacgttcatccgtacaaacaatagtatgcaagtataaacaccaggggaccacacagccatcatactgctcaggaaggagactctttctgtctcctagagatgaacgtactttggtgagaaaagtgcaaatcaatcccagaacaacagcaaagtaccttgtgaagatgctggaggaaacaggtacaaaagtatctatattcacagtaaaacgattcctctatagacataacctgaaaagtcgctcagcaaggaagaagccactgctccaaaaccaccataaaaaaagccagactggtgtcaaactgcacatggggacaagatcgtactttttggagaaatgtcctctggtctgatgaaacaaaaatggaactgtttggcaataatgaccatcgttatgtttggaggaaaaagggggaggcttgcaagccgagggtggcaacatcatgttgtgggggtgctttgctgcaggagggacgggtgcacttcacaaaatagatggcattatgagggaggaaaattatgtggatatattgaagcaacatctcaagacatcagttaaagttaaagcttggtcttccaaatggacaatgaccccaagcatacttccaaagttgtggcaaaatggcaaaatggcttaaggacaacaaagtcaaggtattggagtggtcttcacaaagccctgacctcaaaccaatataacatttatgggcagaacggaaaaagcgtgtgcgagcaaggagtcccacaaacctgactcaattacaccagttctgtcaggaggaatgggccaaaattcacccaacttattgtgggaagtttgtggaaggctacccgaaatgtttgacccaagttaaacaattttaaggcaatgctaccaaatactaattgagtgtatgtacatttctgacccactgagaatgtggtgaaagaaataaaagctgaaataaatggttctctctactattattctgacatttcacattcttaaaataaagtggtgatcctgagtgacctaaaacagggaatttttactaggattaaatgtcaagaattgtaaaaaaaaaaaaaaaaaatttaaaaagaatttaaatgtatttggctaatgtgtatgtaaacttccgacttcaactgtatattgttaTGGTTGAGGGACATTGAAATAgttagagagggggaaggagagagagggggaaggaagaaaCAAATAAGAACAGAGAACAAAAAGGGAGGATAGGCATTAgagaaaaatatacattttagggAAAGCGAAAGAATGCCCGAAACCCCAAATCATACATTTCTTCCCCTGAGTTCCTCTGCCTGTCTTTCATCTTGGAGCGAGATGAAAGGTTGACTCTACGGGCGTCAAATGACCACCCATTACCCACAACCCCCATTCCGCCCAATCATGGTGTGCATTACTCGTCTCCACAGAGACCCtgggctgagagacaaggcaGTGAGCGATATGGCAGGCTCGCAGGGGAGACATCTCTGAGctataaaaaaactaaataagGGAAACGAGAGAGAGGAGCGCCATGGCTGTAAAACTCCCTCACACATTCCCCCAGTGtgaaaaacagaggagagagtgagagagagagaggagggtagagagagggagaaaaataggGAAAATAAGCGAGTGACAAAATGATAGTgaagaggagcaagagagagggggagctagAGGGAGTGGAAGGCtgtgagagagggagcagaggaagagtgagagagtgggagatTTGAAAGTGAGCAATCAGTGTTAGGTCGTGATAGGCTGTTTTCTAATTAGCTGTGTGCCTGCCTGGAACTACACTTGTATTTTACAGATTGAAACATCAGTGGTGccaactgattggctgaagaGTAGAAGAGCTCCGTGATGTATTGTGTGAAGTTTTAGTCAGTGCTGGATCCCTTTCATAAACAGATTGAAAACTGCAAACTGTAGTAAGCgcagtcgactgtggtattttggacgcagtaattgcagaataactgcagttaAACTGCCTAATTACTGTAGTAAAAGcaacagttatactgcactctgactggaATCTTTTTCCGTAAGGGATGAGCCAAAGTGTCAATCACAAGAGTCTCACACTTTAATCAAAGATCCGTTCAAGATGTGTTCCCGCTGGCCAAAGCACGCCAAAGCACGCCAAAGCACGCCAAAGCAAGAGCAATGTATCATTATGCTGCATCACAAGACCAATGAAACACAAGCCTTACAAATACAGTACTGACAACTGATAAAGTAGTGCCCGGCTGAAACCCCTTGATATATACGTCTGATCATCCAAGGCCTGTCATTATCAAAGTGGAATGCCACTGAGCATTGTGTGGGTGTCCTTCTACTGTTCCAGTGTCAGGCTTAACTGTTCAAAAGCCTGCCTTCTGGGTTAAGCCTATCTCATCTGGGTTCGTGGGCTAGATACATTCAGATAACTGACCTCACTTGATTACCACGCGGAATATTCTGGGAAAAAAAAGCAGGAACTCATTTAGAATAGAAGTTATAGAACGTTCCACTTCCTCAGTCAACAGTACACACCAATGGCTACAGAAATAAAACTCTATGACAAACAAAACTATTATGGTATGTTCCTTTTAACAGACTCACTGCTTCTagttgtgcccccccccccccccccccccccccccccccccccacaaaagcGAACCCTTAAAAGCATTTTCTCTTTGTGTCCGTTTCTAAATCTGCAGGCTGGATTTGGGAGGGTTTTGAAAAAGGTCTGAATAATGGCAGGGCTCTTTGTGTGACCACAATTAGATTTCTCTGTTCTGTAGCTCTACAGACTAAGTGCCTCCAACTGAAACAGAAGTACAAAACTAGCTGGGGAAAAAGTCATTATCAAAGCTTTCAAGTTGAAGAGAGTGGTTGCTATTTAGTAAGTGGCTAACAACATGGTTTTGAACTTTTAAAAGCTCAATTGGAAGAGGAATCATCAAATAAAGACTGCACAGCATTGAGACagcaaggggagggagggagcactgCAGCAGCCAATATGGACATTGTCAAATCAACAtctaatccaattttatttgtcacatgcttcatacacaacaggtgtagactaacagtgaaattcttactttacAGGTCCCTTTCCAACACTGGACACAGGATACATAGAgagttatacactgagtggacaaaacattaggtacacctgctctttccctgaCATAGACTGACTAGTTGAATCCAGAtgagatcccttattgatgtcccctgttaaatccacttcaatcagtgtagatgaaggggaggagaccggttaaagaaggaattTAAGTCTTGAGGcgaggcaattgagacatggattgtgtatatggggcgttcagagggtgaatgggaaaaacaaacctttgaatggggtatggtagtaggtgccaggagcaccggtttatGCCAAGAACTGCCACGCAGCTAGGTTTTTCACGCTCCCATGtgtagaatggtccaccacccaaagcacatctagccaacttgacacaactgtgggaagtattggagtcaacatgggccagcatccctatggaacgctttcgacaacttgtagagtccatgccctgacgaattgagtctgttctgagggcaaaagggcagggtgcaactcaatattaggaaagtgtccttaatgtttgtacactcagtgtatcttGCCACCCAAACTTGTCTTTCCACAGGGGCGTAGTCAGGGAACATGCAACAAAAGGTAACACATCATCACTCTTTCTGGTTCTAGAACACCCTGGAGCATTCAAGAACAGCAAGAACATTATTCTCGACCAAAGAGCCTATAGAATATTCTGGAACCAGAGAATATGGTATTCTAGAACATGAGGGGTGAGGCCGGGAGCGGAAAATGGAGTCTTTGACAGAAGGGCCAGAACACACCATAGAATCTCACCTTCAAACCTGTCTCTGACCTCACAGTCAGACAAGAGACTCGCAGAGacgcacagacacagatacagataaagagagagaacggggagatgagagagtaagaacaagaaagagagagagagaggatatagcaATGTGTCAGTCTATGGTTGAAGGGTTTGAGGACAAACGCAGTAGCAGAGGGACACACATTAAAAGAGACTAGACAGTCTTTGTTTGAATTGAATACGTCTCTATTCTCtgaaggagagtaggagggacACACTATATGAAGGTTGAGTAGCGGAGAGAAAGTTTCAAGGTGAACAAGAGGCATAGAGGAGGGGATAGTCAGTTGAATACAGAGTTGACGCTGAGGGGTACGAAGGAgacgctggaatggcttcaggtCTATTCAGAGTTAACGGGGGTCCCTGGTTGGTTGATGGGAGAACAGGTGGGGGCGGAGCTACCAGATGTAGCCAATCTCGTCATCTTTGTCATCTTCCTCGTCCTCGTCATCCTCAATGGCCCCTCTGGGATGGATCCGGCCCCGCCTCTGCTTCTGCCGGCTCCTCCCACTCTGAGCTGGCTCCTCCTCCTGGTCATCAAGGAGAATGACAGCGCCCCCACTGCCAAAATCCCCTGAGGTCTCTTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2593565 lncRNA upstream 10401 27193577 ~ 27193904 (+) True G2267258
TU2593614 lncRNA upstream 17948 27183781 ~ 27186357 (+) True G2267296
TU2593574 lncRNA upstream 94315 27109551 ~ 27109990 (+) True G2267264
TU2593556 lncRNA upstream 115756 27088334 ~ 27088549 (+) True G2267249
TU2593543 lncRNA upstream 125037 27079048 ~ 27079268 (+) True G2267236
TU2593666 lncRNA downstream 55954 27266332 ~ 27266757 (+) True G2267334
TU2593684 lncRNA downstream 77253 27287631 ~ 27287872 (+) True G2267352
TU2593692 lncRNA downstream 95432 27305810 ~ 27306241 (+) True G2267360
TU2593804 lncRNA downstream 271137 27481515 ~ 27503158 (+) True G2267437
TU2593830 lncRNA downstream 348500 27558878 ~ 27571059 (+) True G2267461
XM_036970494.1 mRNA upstream 30185 27125620 ~ 27174120 (+) True LOC110504898
XM_036970339.1 mRNA upstream 720313 26298775 ~ 26483992 (+) False LOC110504416
XM_036970340.1 mRNA upstream 720313 26298775 ~ 26483992 (+) False LOC110504416
XM_036970341.1 mRNA upstream 720313 26298775 ~ 26483992 (+) False LOC110504416
XM_036970342.1 mRNA upstream 912635 26290881 ~ 26291670 (+) False LOC118946064
XM_021583773.2 mRNA downstream 489311 27699689 ~ 27711246 (+) False LOC110504902
XM_021583772.2 mRNA downstream 489313 27699691 ~ 27711246 (+) False LOC110504902
XM_036970184.1 mRNA downstream 489313 27699691 ~ 27711246 (+) True LOC110504902
XM_036969915.1 mRNA downstream 501374 27711752 ~ 27774452 (+) False LOC110504904
XM_036969916.1 mRNA downstream 501374 27711752 ~ 27774452 (+) False LOC110504904
TU2593017 other upstream 268416 26934720 ~ 26935889 (+) True G2266826
TU2592839 other upstream 583357 26591266 ~ 26620948 (+) True G2266668
TU2592687 other upstream 831822 26361992 ~ 26372483 (+) True LOC110504416
TU2592623 other upstream 912644 26289825 ~ 26291661 (+) False LOC118946064
TU2594875 other downstream 1556499 28766877 ~ 28767729 (+) True G2268340
TU2594947 other downstream 1686377 28896755 ~ 28898079 (+) True G2268400
TU2597789 other downstream 3966512 31176890 ~ 31181107 (+) True G2271027
TU2599828 other downstream 5653058 32863436 ~ 32863779 (+) False G2272912
TU2600208 other downstream 6205712 33416090 ~ 33421685 (+) True LOC110505056

Expression Profile