RNA id: TU2593692


Basic Information

Item Value
RNA id TU2593692
length 216
lncRNA type intronic
GC content 0.49
exon number 3
gene id G2267360
representative True

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 27305810 ~ 27306241 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGTAGCCAGATTTGTCTGTGACAGATGGTTTCTATGGCCAGTCTGTCCTCTCTAGGTAGCCAGATTTGTCTGTGACAGACGGTTTCTATGGCCAGTCTGTCCTCTCTAGGTAGCCAAATTTGTCTGTGACAGACGATTTCTATGGCCAGTCTGTCCTCTCTAGGTAGCCAGATTTGTCTGTGACAGACGGTTTCTATGGCCAAGCTGTCCTCTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2593684 lncRNA upstream 17938 27287631 ~ 27287872 (+) True G2267352
TU2593630 lncRNA upstream 23824 27204305 ~ 27281986 (+) False G2267305
TU2593634 lncRNA upstream 27494 27204305 ~ 27278316 (+) False G2267305
TU2593666 lncRNA upstream 39053 27266332 ~ 27266757 (+) True G2267334
TU2593627 lncRNA upstream 40592 27204305 ~ 27265218 (+) False G2267305
TU2593804 lncRNA downstream 175274 27481515 ~ 27503158 (+) True G2267437
TU2593830 lncRNA downstream 252637 27558878 ~ 27571059 (+) True G2267461
TU2593849 lncRNA downstream 311016 27617257 ~ 27617568 (+) True G2267479
TU2594322 lncRNA downstream 395867 27702108 ~ 27702628 (+) True G2267845
TU2594321 lncRNA downstream 433956 27740197 ~ 27740648 (+) False LOC110504904
XM_036970494.1 mRNA upstream 131690 27125620 ~ 27174120 (+) True LOC110504898
XM_036970339.1 mRNA upstream 821818 26298775 ~ 26483992 (+) False LOC110504416
XM_036970340.1 mRNA upstream 821818 26298775 ~ 26483992 (+) False LOC110504416
XM_036970341.1 mRNA upstream 821818 26298775 ~ 26483992 (+) False LOC110504416
XM_036970342.1 mRNA upstream 1014140 26290881 ~ 26291670 (+) False LOC118946064
XM_021583773.2 mRNA downstream 393448 27699689 ~ 27711246 (+) False LOC110504902
XM_021583772.2 mRNA downstream 393450 27699691 ~ 27711246 (+) False LOC110504902
XM_036970184.1 mRNA downstream 393450 27699691 ~ 27711246 (+) True LOC110504902
XM_036969915.1 mRNA downstream 405511 27711752 ~ 27774452 (+) False LOC110504904
XM_036969916.1 mRNA downstream 405511 27711752 ~ 27774452 (+) False LOC110504904
TU2593017 other upstream 369921 26934720 ~ 26935889 (+) True G2266826
TU2592839 other upstream 684862 26591266 ~ 26620948 (+) True G2266668
TU2592687 other upstream 933327 26361992 ~ 26372483 (+) True LOC110504416
TU2592623 other upstream 1014149 26289825 ~ 26291661 (+) False LOC118946064
TU2594875 other downstream 1460636 28766877 ~ 28767729 (+) True G2268340
TU2594947 other downstream 1590514 28896755 ~ 28898079 (+) True G2268400
TU2597789 other downstream 3870649 31176890 ~ 31181107 (+) True G2271027
TU2599828 other downstream 5557195 32863436 ~ 32863779 (+) False G2272912
TU2600208 other downstream 6109849 33416090 ~ 33421685 (+) True LOC110505056

Expression Profile