RNA id: TU2593804


Basic Information

Item Value
RNA id TU2593804
length 1503
lncRNA type read_through
GC content 0.48
exon number 4
gene id G2267437
representative True

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 27481515 ~ 27503158 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agtagggtacggtatggagggatgagagaggagagagaacctgagataacagtagggtacggtatggagagaagagagagaaagagagcagaggacccTGGTTCTGCTATAGAAGAGCTTTAACGATATGATGGAGTGAGACGAAGGGAGAAAGGGAtagatagagatggagacagtAAGAGACATGGACAGAGTGGAAGACATGATAAGCAGACAGAGAAACTGACACAGAcagcgggagagaaagagaatgacatTTTTAATGTTGCAAAATGGTTGGTTTTATGGAAGTGACTCTGGGAGACTGGAGGGGTGGttaagggagggagtgagagagagatagacggaCAACGGTTAAGTGACGAGGGAgatgagcaagagagagatggggacaaagaaagagggagagatggggagagagagcgagaacctAAGATGACAGGAGGGTACAGtacggagggatgagagaggagagagaacctgagataacagtagggtacagtacggagggatgagagaagagagagaacctgagatgacagtagggtacagtacggagggatgagagtagagagagaacctgagatgacagtagggtacagtacggAGGGATGAGATTagagagagaacctgagatgaCATTAGTGTACAGTACGGAGggatgagaaaggagagagaacctgagatgacagtagggtatggtatggagggatgagagatgagagagaacctgagatgaCAGGAGGGTACGGTATGGAGGtatgagaaaggagagagaacctgagatgacagtagggtacggtatggagggatgagagaagagagagaacctgagatgacagtagggtacggtatagagggatgagagaagagagagaacctgagatgacagtagggtacagtacagagggatgagagaggacagagaaccTGAGATGACAGTAGGGTACGGTATAGAggtatgagagaggagagagaacctgagataaCAGTAGGATAtggtatggagggatgagagaggagagagaaccagagataacagtagggtacggtatggagagatgagagaagagagagaacctgagatgaGAGTAGTGTAcggtatggagggatgagagaggagagagaacctgagatgaGAGTAGTGTAcggtatggagggaggagagaagagagagaacctgagatgacagtagggtacggtatggagggatgagagaagagagacaacCTGAGATAACAATAGGGTAcagtatggagagatgagagaagagagagaacctgagatgacagtagggtacggtatggagagatgagagaagagagagaacctgagataacagtagggtacggtatggagggatgagagaagagagagaacctgagataacagtagggtacggtatggagagatgagagagaacctgagataacagtagggtacggtatggagagatgagagaggagagacagagggagtgtgTAACTGACATCTCTTTACCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2593692 lncRNA upstream 175274 27305810 ~ 27306241 (+) True G2267360
TU2593684 lncRNA upstream 193643 27287631 ~ 27287872 (+) True G2267352
TU2593630 lncRNA upstream 199529 27204305 ~ 27281986 (+) False G2267305
TU2593830 lncRNA downstream 55720 27558878 ~ 27571059 (+) True G2267461
TU2593849 lncRNA downstream 114099 27617257 ~ 27617568 (+) True G2267479
TU2594322 lncRNA downstream 198950 27702108 ~ 27702628 (+) True G2267845
TU2594321 lncRNA downstream 237039 27740197 ~ 27740648 (+) False LOC110504904
TU2594318 lncRNA downstream 260965 27764123 ~ 27774417 (+) True LOC110504904
XM_036970494.1 mRNA upstream 307395 27125620 ~ 27174120 (+) True LOC110504898
XM_036970339.1 mRNA upstream 997523 26298775 ~ 26483992 (+) False LOC110504416
XM_036970340.1 mRNA upstream 997523 26298775 ~ 26483992 (+) False LOC110504416
XM_036970341.1 mRNA upstream 997523 26298775 ~ 26483992 (+) False LOC110504416
XM_036970342.1 mRNA upstream 1189845 26290881 ~ 26291670 (+) False LOC118946064
XM_021583773.2 mRNA downstream 196531 27699689 ~ 27711246 (+) False LOC110504902
XM_021583772.2 mRNA downstream 196533 27699691 ~ 27711246 (+) False LOC110504902
XM_036970184.1 mRNA downstream 196533 27699691 ~ 27711246 (+) True LOC110504902
XM_036969915.1 mRNA downstream 208594 27711752 ~ 27774452 (+) False LOC110504904
XM_036969916.1 mRNA downstream 208594 27711752 ~ 27774452 (+) False LOC110504904
TU2593017 other upstream 545626 26934720 ~ 26935889 (+) True G2266826
TU2592839 other upstream 860567 26591266 ~ 26620948 (+) True G2266668
TU2592687 other upstream 1109032 26361992 ~ 26372483 (+) True LOC110504416
TU2592623 other upstream 1189854 26289825 ~ 26291661 (+) False LOC118946064
TU2594875 other downstream 1263719 28766877 ~ 28767729 (+) True G2268340
TU2594947 other downstream 1393597 28896755 ~ 28898079 (+) True G2268400
TU2597789 other downstream 3673732 31176890 ~ 31181107 (+) True G2271027
TU2599828 other downstream 5360278 32863436 ~ 32863779 (+) False G2272912
TU2600208 other downstream 5912932 33416090 ~ 33421685 (+) True LOC110505056

Expression Profile