RNA id: TU2594353


Basic Information

Item Value
RNA id TU2594353
length 388
lncRNA type inter_gene
GC content 0.54
exon number 3
gene id G2267870
representative True

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 27786214 ~ 27792670 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggtacctgtaccgagtcagtgtggaggctatatacaggggtaccggtaccgagtcagtgtggaggctatatacagggggtaccggtacagagtcagtgtggaggatatatacagggggtaccggtacagagtcagtgtggaggctatatacagggggtaccggtacagagtcagtgtggaggatatatacagggggtaccggtacagagtcagtgtggaggcaatatacagggggtaccggtaccgagtcagtgtggaggctatatacagggggtaccggtaccgagtcagtgtggaggctatatacagggggtaccggtaccgagtcagtgtggaggctatatacaggtggtaccagtaccgagtcagtgtggaggctatatacagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2594350 lncRNA upstream 5057 27780925 ~ 27781157 (+) True G2267868
TU2594318 lncRNA upstream 11797 27764123 ~ 27774417 (+) True LOC110504904
TU2594321 lncRNA upstream 45566 27740197 ~ 27740648 (+) False LOC110504904
TU2594322 lncRNA upstream 83586 27702108 ~ 27702628 (+) True G2267845
TU2593849 lncRNA upstream 168646 27617257 ~ 27617568 (+) True G2267479
TU2594356 lncRNA downstream 839 27793509 ~ 27795446 (+) True G2267872
TU2594368 lncRNA downstream 25578 27818248 ~ 27825627 (+) True G2267883
TU2594422 lncRNA downstream 106801 27899471 ~ 27899830 (+) True G2267935
TU2594426 lncRNA downstream 114265 27906935 ~ 27908418 (+) True LOC110504909
TU2594431 lncRNA downstream 124545 27917215 ~ 27923755 (+) True G2267943
XM_036969915.1 mRNA upstream 11762 27711752 ~ 27774452 (+) False LOC110504904
XM_036969916.1 mRNA upstream 11762 27711752 ~ 27774452 (+) False LOC110504904
XM_036969917.1 mRNA upstream 11762 27711752 ~ 27774452 (+) False LOC110504904
XM_036969918.1 mRNA upstream 11762 27711752 ~ 27774452 (+) False LOC110504904
XM_036969919.1 mRNA upstream 11764 27739996 ~ 27774450 (+) False LOC110504904
trnap-ugg-72 mRNA downstream 99731 27892401 ~ 27892472 (+) True trnap-ugg-72
LOC110504908 mRNA downstream 100816 27893486 ~ 27896473 (+) True LOC110504908
XM_021583781.2 mRNA downstream 110027 27902697 ~ 27908430 (+) False LOC110504909
XR_005041164.1 mRNA downstream 110027 27902697 ~ 27908430 (+) False LOC110504909
XR_005041165.1 mRNA downstream 110233 27902903 ~ 27908430 (+) False LOC110504909
TU2593017 other upstream 850325 26934720 ~ 26935889 (+) True G2266826
TU2592839 other upstream 1165266 26591266 ~ 26620948 (+) True G2266668
TU2592687 other upstream 1413731 26361992 ~ 26372483 (+) True LOC110504416
TU2592623 other upstream 1494553 26289825 ~ 26291661 (+) False LOC118946064
TU2594875 other downstream 974207 28766877 ~ 28767729 (+) True G2268340
TU2594947 other downstream 1104085 28896755 ~ 28898079 (+) True G2268400
TU2597789 other downstream 3384220 31176890 ~ 31181107 (+) True G2271027
TU2599828 other downstream 5070766 32863436 ~ 32863779 (+) False G2272912
TU2600208 other downstream 5623420 33416090 ~ 33421685 (+) True LOC110505056

Expression Profile