RNA id: TU2594422


Basic Information

Item Value
RNA id TU2594422
length 282
lncRNA type antisense_over
GC content 0.59
exon number 2
gene id G2267935
representative True

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 27899471 ~ 27899830 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCAGGCTGTCGTGGGACTGGAGGAGATCCCAGCTCTCCCTGGCCAAACGGAAGCTCTCCAGAGTCTCTGCCCACCCGGGCATCTCTATTTTGTTGACCATGATGTTCCGGCCACGCCCCTTCCCCAGGCCCTCGTCATCATCTGAGCTCATGGTCTTCTCGCGGCCGTCGGCCAGTTTGCGTTTCTTGTGAGCGTGtttccctgctcctctctccagttcTACTTCACTGTACACTGAGCTCAGGTCCTCCAACAGTATCCACGACCCAGAGGCCAACGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2594368 lncRNA upstream 73844 27818248 ~ 27825627 (+) True G2267883
TU2594356 lncRNA upstream 104025 27793509 ~ 27795446 (+) True G2267872
TU2594353 lncRNA upstream 106801 27786214 ~ 27792670 (+) True G2267870
TU2594350 lncRNA upstream 118314 27780925 ~ 27781157 (+) True G2267868
TU2594318 lncRNA upstream 125054 27764123 ~ 27774417 (+) True LOC110504904
TU2594426 lncRNA downstream 7105 27906935 ~ 27908418 (+) True LOC110504909
TU2594431 lncRNA downstream 17385 27917215 ~ 27923755 (+) True G2267943
TU2594434 lncRNA downstream 27695 27927525 ~ 27928014 (+) True G2267946
TU2594442 lncRNA downstream 53316 27953146 ~ 27954152 (+) True LOC110504911
TU2594443 lncRNA downstream 54780 27954610 ~ 27954885 (+) True G2267955
LOC110504908 mRNA upstream 2998 27893486 ~ 27896473 (+) True LOC110504908
trnap-ugg-72 mRNA upstream 6999 27892401 ~ 27892472 (+) True trnap-ugg-72
XM_036969915.1 mRNA upstream 125019 27711752 ~ 27774452 (+) False LOC110504904
XM_036969916.1 mRNA upstream 125019 27711752 ~ 27774452 (+) False LOC110504904
XM_036969917.1 mRNA upstream 125019 27711752 ~ 27774452 (+) False LOC110504904
XM_021583781.2 mRNA downstream 2867 27902697 ~ 27908430 (+) False LOC110504909
XR_005041164.1 mRNA downstream 2867 27902697 ~ 27908430 (+) False LOC110504909
XR_005041165.1 mRNA downstream 3073 27902903 ~ 27908430 (+) False LOC110504909
XR_005041166.1 mRNA downstream 3073 27902903 ~ 27908430 (+) False LOC110504909
XM_021583783.2 mRNA downstream 53282 27953112 ~ 27954148 (+) False LOC110504911
TU2593017 other upstream 963582 26934720 ~ 26935889 (+) True G2266826
TU2592839 other upstream 1278523 26591266 ~ 26620948 (+) True G2266668
TU2592687 other upstream 1526988 26361992 ~ 26372483 (+) True LOC110504416
TU2592623 other upstream 1607810 26289825 ~ 26291661 (+) False LOC118946064
TU2594875 other downstream 867047 28766877 ~ 28767729 (+) True G2268340
TU2594947 other downstream 996925 28896755 ~ 28898079 (+) True G2268400
TU2597789 other downstream 3277060 31176890 ~ 31181107 (+) True G2271027
TU2599828 other downstream 4963606 32863436 ~ 32863779 (+) False G2272912
TU2600208 other downstream 5516260 33416090 ~ 33421685 (+) True LOC110505056

Expression Profile