RNA id: TU2594431


Basic Information

Item Value
RNA id TU2594431
length 1537
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id G2267943
representative True

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 27917215 ~ 27923755 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTTTAATGTTAACACAAATGTAACAGAGAATGATATGTGGGAGAACAGGGAAGTAGTGGTTATGTTTGCATAGCCATAAACCAAGGAAGGACAGATAGACTCAAACTAACACAAACATAGATGTATATCTATCTACAGGTCTGGTACAAACCGAATCAGTCAGTCCGCCCGTCTGCAGAGCTAAACATGGGCAAGtagtaaaatagtaaaaattgTGGCTCAGTGTTAAATGCCTTTGGATCGATGCTATGTTTTAACAGTCAGCCTTTCTTGTGCCGTGTCAAAACCTTTTTACAAAATACCAAATGAATATCCTTTCCACTATTCCCCCATCCACGCAATGCACCCCAGAAAAATATATGTATCCTTTGGATTCAAAGTTGATATACTGTATAATTACTGCATATAAGCGTTTGGGTTATTGAGTGTTTTCTCCATTCAAGCATTCGCACACAAGTAGTCAGTCAGGAGCCAGGAATGGAACAGAAATAGATAGCTTTAACATGGTTCATTTCTCTTCTTAAAGGTGcaatctgtttttttattttacggCTAATAGTGCTCCCCTTTCATTTGATTGTAAACGGAAGGGGTGGGTCTTCGCGAATGTAAAAGTTTGTGTTTTACTATTTGGCATAACATGCTCGTTGTACTTTTTCCTAGAGTTCCCAATAGAAACATCTAAGTTACAGATTGCACCTTTAACTGGATCCGAAGAATCATTGAAGCAGCTAAAGCAGACACCAGCCCAGAGGAGGAAGAATCATTGAAGCAGCTAAAGCAGACACCAGCCCAGAGGAGGAAGAATCATTGAAGCAGCTAAAGCAGACACCAGCCCAGAGGAGGAACAgaaggtggagggaggtagaAGAAACTACAACATCAATAAGGTCTTACACCAGCAAGGACCATGGCGCAAACAGTCATAGAAATGAATACATACATAAATACGTACATACATaattcatacatacagtatacaataaGAAGATAGATAGTTAGTTATAAAATACCTATGTACAAATGCATAGTCCAGATGAGTCCATCAGGAGACCTAGCAGTAATGGCAGTCAGTGGAAGAGGTTATTTTCATCATTtaaggatgtgtgtgtgcgtgtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgatctgtgtgTATGTTAATCATAGACAGTGTGTATGGTACCTTGATGTCGTGCAGGGAGATGCGTAGCAGGCTGACTCTGTCTGACTCAGAGAGCAGCTCCACTCTACTGATGCTGCTGAAGTCGACCAGGGTGGACACCATGTTGAGCTTGTGGTTGACCACCTGACTCAGGCCATAGCGCGCCCCCACCAACAGACTGACCAGCGCCTCCCGATCCTGCAACTGGGGTGGGGGAGGatgtagacagacagaggggCAGGGGTACAGAGGTCCGAAGAGGAAGGGGGACGGGAGagacatgagggaagagagagagggagtgggaaagaggaaaagaggtagagagagagagaagaggggtgaaAGGGAGAAATACGGAGGTGCATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2594426 lncRNA upstream 8797 27906935 ~ 27908418 (+) True LOC110504909
TU2594422 lncRNA upstream 17385 27899471 ~ 27899830 (+) True G2267935
TU2594368 lncRNA upstream 91588 27818248 ~ 27825627 (+) True G2267883
TU2594356 lncRNA upstream 121769 27793509 ~ 27795446 (+) True G2267872
TU2594353 lncRNA upstream 124545 27786214 ~ 27792670 (+) True G2267870
TU2594434 lncRNA downstream 3770 27927525 ~ 27928014 (+) True G2267946
TU2594442 lncRNA downstream 29391 27953146 ~ 27954152 (+) True LOC110504911
TU2594443 lncRNA downstream 30855 27954610 ~ 27954885 (+) True G2267955
TU2594450 lncRNA downstream 32295 27956050 ~ 27956434 (+) True G2267962
TU2594409 lncRNA downstream 38147 27961902 ~ 27963378 (+) True G2267924
XM_021583781.2 mRNA upstream 8785 27902697 ~ 27908430 (+) False LOC110504909
XR_005041164.1 mRNA upstream 8785 27902697 ~ 27908430 (+) False LOC110504909
XR_005041165.1 mRNA upstream 8785 27902903 ~ 27908430 (+) False LOC110504909
XR_005041166.1 mRNA upstream 8785 27902903 ~ 27908430 (+) False LOC110504909
LOC110504908 mRNA upstream 20742 27893486 ~ 27896473 (+) True LOC110504908
XM_021583783.2 mRNA downstream 29357 27953112 ~ 27954148 (+) False LOC110504911
XM_021583784.2 mRNA downstream 34983 27958738 ~ 27961819 (+) True LOC110504912
XM_036969630.1 mRNA downstream 64197 27987952 ~ 28010322 (+) False LOC110504914
XM_036970092.1 mRNA downstream 130633 28054388 ~ 28056425 (+) True LOC118946038
XM_021583792.2 mRNA downstream 133657 28057412 ~ 28065727 (+) False LOC110504919
TU2593017 other upstream 981326 26934720 ~ 26935889 (+) True G2266826
TU2592839 other upstream 1296267 26591266 ~ 26620948 (+) True G2266668
TU2592687 other upstream 1544732 26361992 ~ 26372483 (+) True LOC110504416
TU2592623 other upstream 1625554 26289825 ~ 26291661 (+) False LOC118946064
TU2594875 other downstream 843122 28766877 ~ 28767729 (+) True G2268340
TU2594947 other downstream 973000 28896755 ~ 28898079 (+) True G2268400
TU2597789 other downstream 3253135 31176890 ~ 31181107 (+) True G2271027
TU2599828 other downstream 4939681 32863436 ~ 32863779 (+) False G2272912
TU2600208 other downstream 5492335 33416090 ~ 33421685 (+) True LOC110505056

Expression Profile